PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_079780_xxpf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 132aa    MW: 14885.8 Da    PI: 8.9913
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_079780_xxpf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.8e-126284527
                        --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         C++f+ tG+C+yGd+Ck+ H++
  Bv4_079780_xxpf.t1 62 VCNRFMTTGFCSYGDSCKYLHPK 84
                        6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0017338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.08E-13449No hitNo description
PfamPF062208.9E-9539IPR013085Zinc finger, U1-C type
SMARTSM003563.9E-65784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9345785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-85888IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-96284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-96288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MTAGKYNCDY CDKEFRDTPA ARRRHLQGIQ HQRNRKLWYD SISFQQGHNQ IPVATPNFGK  60
GVCNRFMTTG FCSYGDSCKY LHPKHSLQVP VIQGTSSHVA SQSFGMSLEN LPPSLRPPPE  120
GGYPPLPFVD WG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674530.15e-97PREDICTED: zinc finger CCCH domain-containing protein 3
RefseqXP_010674531.15e-97PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP116e-38C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0K9RUW02e-66A0A0K9RUW0_SPIOL; Uncharacterized protein
STRINGXP_010674530.12e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.16e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]