PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_081860_gthj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 328aa    MW: 34043.2 Da    PI: 6.6295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_081860_gthj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10177221554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Bv4_081860_gthj.t1 177 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 221
                         99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-15170231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-11176226No hitNo description
PfamPF000101.2E-7177221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MANNQPHHEG LGDEFFEQIL SVPGYTTGGS DGGGFVGGGP GGDGSSILLG LGPGDGSAHG  60
GVNVGLGIGG FRAGMGLGLP LGLNLDHGSS SNHGAGDGGH ASSSSRINEN DSMHLTNLFP  120
AFGHQLQPQS LRPAPPSIQV HQTFHGHTTS GPAPGVSHPP AVRPRVRARR GQATDPHSIA  180
ERLRRERIAE RMKALQELVP SCNKTDRAAM LDEIVDYVKF LRLQVKVLSM SRLGGAGAVA  240
QLVADVPPSS AEGEGVDGAQ AAWEKWSNDG TEQQVAKLME QDIGAAMQFL QSKALCIMPV  300
SLASAIFRSH PPPPDPPGIV KPEANPPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674832.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-88UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0K9RX001e-162A0A0K9RX00_SPIOL; Uncharacterized protein
STRINGXP_010674832.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.14e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]