PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_082120_ascg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 522aa    MW: 58113.2 Da    PI: 5.596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_082120_ascg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.7e-1188110426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+f+++tGtCk+G +C+F+H+
  Bv4_082120_ascg.t1  88 VDCSFYLKTGTCKFGQNCRFNHP 110
                         68********************8 PP
2zf-CCCH26.88.9e-09139160526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f+  G CkyGd C+++H+
  Bv4_082120_ascg.t1 139 DCKYFRTPGGCKYGDACRYNHS 160
                         6********************7 PP
3zf-CCCH34.43.7e-11183205426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +C f++rtG C yG++C+F+H+
  Bv4_082120_ascg.t1 183 QECTFYLRTGSCGYGANCRFHHP 205
                         68********************9 PP
4zf-CCCH34.53.6e-11323348126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C++f++tG Cky + C+++H+
  Bv4_082120_ascg.t1 323 PGQPDCDYFMKTGDCKYRAACRYNHP 348
                         5789*********************9 PP
5zf-CCCH25.91.7e-08404430127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C +f++tG Ck+ + C++ H++
  Bv4_082120_ascg.t1 404 PGQPECEYFMKTGNCKFKSACRYDHPR 430
                         5789*********************96 PP
6zf-CCCH28.13.6e-09451475226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         + ++Cr++   GtCkyG +C F+H+
  Bv4_082120_ascg.t1 451 GSKICRNYEVQGTCKYGRNCLFHHP 475
                         5689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.84984112IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-484111IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-888110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-689112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-590110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012134161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5139162IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6139160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5140161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131179207IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6179206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6181207IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9182205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5185204IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178322350IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-7324348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643403431IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-5403430IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6405430IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-5407432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315449477IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5449476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6451477IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6451475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6453475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MGTCEEIGPI DETQNEIKLG ISSNGTHNDE HCEEDGDQPT EEEVLAQQFE SVILEGNESE  60
VKIEGEEKEE EEQGDGKLHF YPLRPYAVDC SFYLKTGTCK FGQNCRFNHP SERAFQPVQD  120
QEKGTDENNG TIFDTGKIDC KYFRTPGGCK YGDACRYNHS AQRVEREGPE LNFLGLPVRP  180
SEQECTFYLR TGSCGYGANC RFHHPDPTAA KESEPRNSLA NGVYARGGNN MSRMYVGEPG  240
VSRSISELSN GINSMNGLPY AGMSPYHQVI PQNAGWNHDQ ADLSLSVKKT PLPHQIVNTI  300
SKKIDSSINY EQVIQSEEFP VRPGQPDCDY FMKTGDCKYR AACRYNHPVS RDSKLRLPPL  360
SSKGLCSKSR NHELPNLNSG NPRKNGTPSH QQQQLQNGQY PERPGQPECE YFMKTGNCKF  420
KSACRYDHPR DRISTSSPCS LNESGLPLRP GSKICRNYEV QGTCKYGRNC LFHHPDNGLL  480
AVPVDPAPVQ EHSSSSNLVV AAEMESAGGD NVQSDWGDGW VM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674845.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A0K9QFH90.0A0A0K9QFH9_SPIOL; Uncharacterized protein
STRINGXP_010674845.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-71C3H family protein