PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_083840_imog.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CPP
Protein Properties Length: 776aa    MW: 86232.6 Da    PI: 6.4696
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_083840_imog.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.86.6e-16478516240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+CnCk+skClk+YCeCfaag +C e C+C+dC+Nk 
  Bv4_083840_imog.t1 478 SCKRCNCKRSKCLKLYCECFAAGLYCVEPCNCQDCFNKP 516
                         689**********************************96 PP
2TCR52.69.3e-17562601140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+gCnCkks ClkkYCeCf+ g+ Cs +C+Ce+CkN+ 
  Bv4_083840_imog.t1 562 RHKRGCNCKKSGCLKKYCECFQGGVGCSLSCRCEGCKNTF 601
                         589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.0E-17477518IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.726478602IPR005172CRC domain
PfamPF036382.6E-11480515IPR005172CRC domain
SMARTSM011142.8E-18562603IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-12564600IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MDTPDKTTQP SPSSFLSKFE DSPVFNYIST LSPIKSFSVG HNAQAFHLLS FPSPQAFQTP  60
PTSFLKETKI RRAINAKNGG ENQNLNTSVA IEPAHHLNSE EVDKIKKEVT VSTNDESSKL  120
VSEIPRPLNY DCNTSQNNEV HCDAVKPNHG FHVPGTERIP LKVVHENSKE ADCSFETEMS  180
VQTKANQMKQ SKEVCEWEKF VSEASGILNC HSPTKESYHD ELDERSADPG MLSFVATVLQ  240
PPNEHMNDPR PVCPVISENH QMDLPSEKPV EIGNLNERTE LPSGNDRAVH AEEVVQYKKT  300
EKDDKSCPHQ QQQTTRRRCL VYEMSGSHYR KLLADSTGSS PTILSANPSI STDKFLMTSR  360
PGGSKFSSVL PGIGLHLNAL AAAAKDKIIV KRQTLTCRRQ LISSPCITSS FDSQISDIKP  420
LATQTTSELE RDPDEQNDGL SVSGNASENT VVGEGIELSQ NSPKKKRRKS ENVEETDSCK  480
RCNCKRSKCL KLYCECFAAG LYCVEPCNCQ DCFNKPIHEE TVLETRRQIE SRNPLAFAPK  540
VIRCSDTPNS MEEVNKTPAS ARHKRGCNCK KSGCLKKYCE CFQGGVGCSL SCRCEGCKNT  600
FGRKEGTESI FFHETKFHQQ NASDVGVHDD IARIDEENHD KATSDPSDNA RQPVRRPFHF  660
GGAAPHFPTL ADEPFLQSCA SQNIDYADQM SFEEDLKIEV LEDDATNALN LKGDYSLPTT  720
YIKSASPNCK RISPPHCDFE TSPGWKSCRK LILRSIPSIP TFTPEKESTE LLGKLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1648259914120Protein lin-54 homolog
5fd3_B7e-1648259914120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463467KKKRR
2463468KKKRRK
3464468KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675092.10.0PREDICTED: CRC domain-containing protein TSO1 isoform X1
TrEMBLA0A0K9QWU50.0A0A0K9QWU5_SPIOL; Uncharacterized protein
STRINGXP_010675092.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.17e-92Tesmin/TSO1-like CXC domain-containing protein