PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_084740_hqpd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 443aa    MW: 48962.3 Da    PI: 5.1876
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_084740_hqpd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-164892147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r rWT+eE++++++a k++G   W++I +++g  +t+ q++s+ qk+
  Bv4_084740_hqpd.t1 48 RERWTEEEHKKFLEALKLYGRA-WRKIEEHVG-SKTAVQIRSHAQKF 92
                        78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.33E-174296IPR009057Homeodomain-like
PROSITE profilePS5129421.4134397IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-104599IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-174695IPR006447Myb domain, plants
SMARTSM007172.0E-134795IPR001005SANT/Myb domain
PfamPF002491.1E-134891IPR001005SANT/Myb domain
CDDcd001671.66E-105093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLSSTMVAQE ETSFPQSSSG DGVSGIHSGA GESHVPKIRK PYTITKQRER WTEEEHKKFL  60
EALKLYGRAW RKIEEHVGSK TAVQIRSHAQ KFFSKVVRET NNTNANSVDP IEIPPPRPKR  120
KPSHPYPRKL VLPSRNDMAM EQQARSASPN SWISEQENQS PTSVLSAVAS DTLASAESAT  180
PNTSPSPMSS GDFADQVAMF ESEDNAPQGE VHVSNSVPIV PASVKLELFS DKESFDKDES  240
ASTKVFKLFG KDVVVPGSSS DSPSCLSKSP SSDMGEGVLQ AYPEDYKSAD IPMRSVETSE  300
DLPTFYYMNR SANQVEKPTP LPWWVFFRGI SVPPFGDTQE KGSAREGSSA DSDSDSVNGG  360
ETLDKNWETE TESGQCGPSS HKESKFLEDP CPEKECTLLE KRISVDKARK GFVPYKRCVS  420
ERDMQSSMIS SEERESQRIR LCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675239.10.0PREDICTED: protein REVEILLE 2 isoform X1
TrEMBLA0A0K9R4830.0A0A0K9R483_SPIOL; Uncharacterized protein
STRINGXP_010675239.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.17e-52MYB_related family protein