PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_086670_khde.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 183aa    MW: 19596.8 Da    PI: 6.5289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_086670_khde.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-192675255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrdp +   ++r++lg+f taeeAa+a++aa+ +++g
  Bv4_086670_khde.t1 26 RYRGVRKRP-WGRYAAEIRDPLK---KTRVWLGTFNTAEEAARAYDAAAVEFRG 75
                        59*******.**********743...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.9862683IPR001471AP2/ERF domain
SMARTSM003805.0E-372689IPR001471AP2/ERF domain
PfamPF008475.6E-132675IPR001471AP2/ERF domain
CDDcd000188.83E-192682No hitNo description
SuperFamilySSF541711.31E-222683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-322683IPR001471AP2/ERF domain
PRINTSPR003671.6E-112738IPR001471AP2/ERF domain
PRINTSPR003671.6E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSPKEKEQNT LKHGVGVAAN ANAEIRYRGV RKRPWGRYAA EIRDPLKKTR VWLGTFNTAE  60
EAARAYDAAA VEFRGAKART NFSLADSNQC CLSSGDSTTL ESLDAPPPSL ELTLSADGAA  120
ARGDNSYALY GALAKRVSDI REALRCGHNG GAQAQSEEST VDSGNRMSVI DLDLNLAPPQ  180
EVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-202784664ATERF1
3gcc_A6e-202784664ATERF1
5wx9_A6e-201482571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675550.11e-133PREDICTED: ethylene-responsive transcription factor 8
SwissprotQ9MAI54e-34ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLA0A0K9RDB08e-51A0A0K9RDB0_SPIOL; Uncharacterized protein
STRINGXP_010675550.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.12e-35ethylene response factor 8
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]