PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_086850_ncij.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 252aa    MW: 28514.2 Da    PI: 10.0683
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_086850_ncij.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95.2e-42126202278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         Cq+e+C+adl++ak+yhrrhkvCe+h+kap+vlvs+l+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+++
  Bv4_086850_ncij.t1 126 CQAEKCTADLTDAKRYHRRHKVCEFHAKAPSVLVSNLRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKSSS 202
                         **************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-34120187IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017123200IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-38124204IPR004333Transcription factor, SBP-box
PfamPF031102.9E-31126199IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDFHKPENTA TSKRMMMMMM RDKTTKTRTS HKNNTSTINF VDHDQEDKLS DDDNNNNNNN  60
NNNHMGVADQ EHELTMSRTT HDTFTTTTTT TNDEKKPKRA TAAHTGRRVA SAAGGGGGER  120
GGIISCQAEK CTADLTDAKR YHRRHKVCEF HAKAPSVLVS NLRQRFCQQC SRFHELSEFD  180
ETKRSCRRRL AGHNERRRKS SSDTQGEGGS SSNQTKGNNP QFRPPSDHER ANITQISYSG  240
NGTSTYKQFQ IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-38122199784squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675500.10.0PREDICTED: squamosa promoter-binding-like protein 4
TrEMBLA0A0K9QRG94e-62A0A0K9QRG9_SPIOL; Uncharacterized protein
STRINGXP_010675500.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-41squamosa promoter binding protein-like 4