PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_091500_eukp.t3
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 304aa    MW: 34799.3 Da    PI: 9.694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_091500_eukp.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08116141530
                         HHHHHHHHHHHHHHHHHHHHCTSCCC CS
                 HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                         h   Er+RRdriN+++  L+el+P +
  Bv4_091500_eukp.t3 116 HHLSERKRRDRINEKMKALQELIPRD 141
                         8889********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511949.40481250IPR001650Helicase, C-terminal
CDDcd000838.67E-5109139No hitNo description
SuperFamilySSF474591.7E-7112141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-9114143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6115141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.3005.5E-9159219IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525405.11E-15160220IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF132344.2E-6213260IPR025696rRNA-processing arch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MCFYFSLIPR SLSFPLLQTA SLPLSSFFTL KSAPSNACQV GGNLADAIEN GTQDQHAKAL  60
IGELNSRFEK CQQLLNSIAG KINSKAMDVE LEAGHDEKKH SRGSHFSKRS RATEVHHLSE  120
RKRRDRINEK MKALQELIPR DYMFPHRDPA TQFLVVFGSK FAMGLNMPAK TVVFTAVKKF  180
DGDSHRYIRS GEYIQMSGRA GRRGKDDRGI CIIMIDEQSD VAEYHKLRLD LALLEKKMMS  240
DITRLERVLY YLLPGRLVYI MIWIIIKLPP LQVALYPEIS QMSRFICERN LQNPYSNSKT  300
VHEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2xgj_A8e-22155248435536ATP-DEPENDENT RNA HELICASE DOB1
2xgj_B8e-22155248435536ATP-DEPENDENT RNA HELICASE DOB1
4qu4_A9e-22155218533597ATP-dependent RNA helicase DOB1
4u4c_A9e-22155218423487ATP-dependent RNA helicase DOB1
5ooq_A9e-22155218423487ATP-dependent RNA helicase DOB1
5ooq_B9e-22155218423487ATP-dependent RNA helicase DOB1
6fsz_MM9e-22155218498562ATP-dependent RNA helicase DOB1
6ft6_MM9e-22155218436500ATP-dependent RNA helicase DOB1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019108092.11e-162PREDICTED: antiviral helicase SKI2
STRINGXP_010694187.11e-161(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.19e-15phytochrome interacting factor 3-like 5