PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_091720_nksd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 160aa    MW: 18031.5 Da    PI: 4.3973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_091720_nksd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-1441138198
                         EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                  B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                         f+ +lt+s+v+     +l+lp +f++   +k   ++  ++ +  grsWe ++  ++   +  + + W+ F+++n Lk+gD +vF+l+  r 
  Bv4_091720_nksd.t1  41 FDLILTRSHVGDAyrFQLILPQPFTRLLPNK---TVP-VILTCGGRSWETTYLGDNAAYQKKFDQRWRAFAEDNMLKVGDACVFELMeCRd 127
                         566788888887755788*******655433...333.4456799*******9899998999***********************886566 PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                         ++ +++v+v+r
  Bv4_091720_nksd.t1 128 TSLKFKVQVLR 138
                         88888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-1637138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-1537138IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-1839138No hitNo description
SMARTSM010192.8E-841140IPR003340B3 DNA binding domain
PROSITE profilePS5086310.96943140IPR003340B3 DNA binding domain
PfamPF023623.0E-1144138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSEGLELMQK NEQVCALESA SVPPDSCHDD DIDPLSGKPY FDLILTRSHV GDAYRFQLIL  60
PQPFTRLLPN KTVPVILTCG GRSWETTYLG DNAAYQKKFD QRWRAFAEDN MLKVGDACVF  120
ELMECRDTSL KFKVQVLRGD FPSILLGDQD GTIDNPIVVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694213.11e-117PREDICTED: B3 domain-containing protein Os04g0386900
RefseqXP_010694214.11e-117PREDICTED: B3 domain-containing protein Os04g0386900
TrEMBLA0A0K9QEU52e-62A0A0K9QEU5_SPIOL; Uncharacterized protein
STRINGXP_010694213.11e-117(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-06B3 family protein