PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_091730_afia.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 147aa    MW: 16692.1 Da    PI: 6.9336
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_091730_afia.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.5e-1330121196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+ vl +s+v+ s  + +p + ++   + +++s+ lt++    rsW++++  ++   + + ++ WkeFv +n+Lk+gD +vF+ ++rs+++
  Bv4_091730_afia.t1  30 FDIVLCKSHVFPSYHIAVPSESTR---LLPTKSVPLTFTR-GKRSWKLTYMGNGAHLKRIDSSSWKEFVIDNRLKVGDACVFEIMERSDTS 116
                         566777888888887888888874...3345664555443.55*******4444444455669********************88776666 PP

                         .EEEE CS
                  B3  92 lvvkv 96 
                         l++kv
  Bv4_091730_afia.t1 117 LKFKV 121
                         66554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1226125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-1327125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1428125No hitNo description
PROSITE profilePS5086310.99730127IPR003340B3 DNA binding domain
SMARTSM010190.005330127IPR003340B3 DNA binding domain
PfamPF023622.7E-1031121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MMKEEQTSEP VSEKTCSDDE IEPLTGKPFF DIVLCKSHVF PSYHIAVPSE STRLLPTKSV  60
PLTFTRGKRS WKLTYMGNGA HLKRIDSSSW KEFVIDNRLK VGDACVFEIM ERSDTSLKFK  120
VQVLRGDFPS VLLDREHGSS NNPVIIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694215.11e-106PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0K9QEU51e-45A0A0K9QEU5_SPIOL; Uncharacterized protein
STRINGXP_010694215.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-08B3 family protein