PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_092590_cwni.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 494aa    MW: 53612.6 Da    PI: 6.4396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_092590_cwni.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.3e-063834211154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Bv4_092590_cwni.t2 383 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 421
                         5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.449372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.82E-7382426No hitNo description
SuperFamilySSF474592.62E-11382434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0037383427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-9386429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAEEYCGGPN WWDSPTTNRS RFDGGSGGGG GAGGGSSSTS STTTLANSGG GTAYGWLTDG  60
PTAVDTKMDA SSLQLVGLGL SSQAMAEWNQ QQTTTILNPE KADNSFRSML QEGIGLNANF  120
QQDSSGGGGG GGGGGGVLFG GNNSSHLHQW RPEKLFPSNE DSSSEFKQLG RGFSLDNQPQ  180
FSPNGSSIES TVTCQGLNAP SSFQLDSSSS SSVFGSPSSI LQGLMGTEHQ NHQQQEQQQQ  240
QQQQQQQQQQ QQHINTNYQQ NYYGMGVAND HHHQQSQLPS PWAKVPQFLR ATSPKQQQQQ  300
QQLQFMNNAP YWSTSTPLND VRPTFFSSLQ AGQLPNMPTF EEKPKTTMEV RDTSSMLKKS  360
GSENNIKRAR NDGASSTLPP FKVRKEKMGD RITALQQLVS PFGKTDTASV LSEAIEYIKF  420
LHEQVSVLSN PYLKSGGSYQ QHQQSNEKAK IDPDGPKQDL RSRGLCLVPV SSTFPVTHET  480
TVDFWTPTFG GTFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12535SGGGGGAGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694303.10.0PREDICTED: transcription factor bHLH123 isoform X2
TrEMBLA0A0K9RS620.0A0A0K9RS62_SPIOL; Uncharacterized protein
STRINGXP_010694302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-70bHLH family protein