PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_093610_xiqu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 401aa    MW: 45048.9 Da    PI: 5.2684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_093610_xiqu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.81e-53241511128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         l+pGfrFhPtd+elv++yLk+k+ gk++++ ++i+e+diyk+ePwdLp  +k+k++++ewyfF  +d+ky +g+r nrat +gyWkatg+d
  Bv4_093610_xiqu.t1  24 LAPGFRFHPTDQELVSYYLKRKICGKPIRF-DAISETDIYKSEPWDLPalSKLKSRDNEWYFFGVQDRKYVNGSRVNRATGKGYWKATGND 113
                         579**************************9.99***************544999999********************************** PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++++ + ++vg+kktLvfy+grap g++t+Wvmheyrl
  Bv4_093610_xiqu.t1 114 RPIIH-NFRTVGMKKTLVFYSGRAPCGKRTNWVMHEYRL 151
                         *****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-6020174IPR003441NAC domain
PROSITE profilePS5100557.29824174IPR003441NAC domain
PfamPF023654.3E-2726151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGTEPPPPPQ SPPRLLPPAT ATSLAPGFRF HPTDQELVSY YLKRKICGKP IRFDAISETD  60
IYKSEPWDLP ALSKLKSRDN EWYFFGVQDR KYVNGSRVNR ATGKGYWKAT GNDRPIIHNF  120
RTVGMKKTLV FYSGRAPCGK RTNWVMHEYR LTDEELAKSG IVLDAYLLCK ILKKSGPGFK  180
PGEQYGPFVE EEWEKDESTL VPGEEGDDDV AVNDDARMED SMQSFYNSES APVTSCGLST  240
EVQEIPPLCK IERGEEGPVP CTVDPEPLSL GPNKRSRQCE PDTCHSHASE ISTTITQGPC  300
SSSTGTTNFS TGLLEFPLLE SVEPKERPSP PPANVIDINV PPSYLKLFEE LRNEIYRTSI  360
EKESLKIEVM SARTMINILQ TKIDHLTKEN EDLKKTNLRD K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-482317514169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694507.10.0PREDICTED: NAC domain-containing protein 53
TrEMBLA0A0K9R5V80.0A0A0K9R5V8_SPIOL; Uncharacterized protein
STRINGXP_010694507.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-103NAC domain containing protein 50