PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_093720_guiw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 540aa    MW: 59948.9 Da    PI: 4.3379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_093720_guiw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-53101371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         l+pGfrFhPtdeelv++yL++kv+gk++++ ++i+e+diykveP+dLp  +k+k+++ ewyfFs  d+ky +g+r+nrat++gyWk+tgkd
  Bv4_093720_guiw.t1  10 LAPGFRFHPTDEELVWYYLRRKVSGKPFRV-DAISEIDIYKVEPSDLPgmSKLKTRDLEWYFFSALDRKYGNGSRTNRATNEGYWKTTGKD 99 
                         579***************************.99***************6337778888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v++ ++ +vg+kktLv+++grap+ge+t+Wvmhey+l
  Bv4_093720_guiw.t1 100 RPVYH-RSLVVGMKKTLVYHRGRAPRGERTNWVMHEYKL 137
                         *****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-617160IPR003441NAC domain
PROSITE profilePS5100557.0110160IPR003441NAC domain
PfamPF023652.8E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGRNSSSTSL APGFRFHPTD EELVWYYLRR KVSGKPFRVD AISEIDIYKV EPSDLPGMSK  60
LKTRDLEWYF FSALDRKYGN GSRTNRATNE GYWKTTGKDR PVYHRSLVVG MKKTLVYHRG  120
RAPRGERTNW VMHEYKLSDE VLDKAGYFPD GFVLCRVFQK SGTGPKNGEQ YGAPLVEEEW  180
EDDNSRALMP TEVSFEDPYV DDDAYIEQND LDQVLDYQLA ENVPYPVTID DLHDIAGIDE  240
SVVGESEDKC SLQALDGQQF YDLVHGESSA CVVKNEHMAQ PNDMNNEAPI DLLDELLSGN  300
VPPEDGLFLD TVDFLGPAQE PHDFDLLGSY LDDDIDIGPY LNFDSPLEVT DNDADQVFST  360
KQHVIDATWQ IPSASQQLPE TGNDGIASSS EQVKELSKAK PSETDVQYPV MNQASRFLGN  420
IPAPPAFASE LPSKDMAARL SAAVQSSTSV HVTANMIRIR DMPIGVSGSG LHWSFDKTGN  480
VNVLLSFDLP EAVSPVGLES FTSLLSSKMS TAASRGWLCF MFCIAFAAIS IKVGTCIYAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-46916014168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694513.10.0PREDICTED: NAC domain-containing protein 78
TrEMBLA0A0K9RU350.0A0A0K9RU35_SPIOL; Uncharacterized protein
STRINGXP_010694513.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-129NAC domain containing protein 2