PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_094560_frca.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 374aa    MW: 42194.7 Da    PI: 6.0779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_094560_frca.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14159210155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++eLr+l+P++   + ++ + a+i+  A++++k+L+
  Bv4_094560_frca.t1 159 QRMTHIAVERNRRKQMNEYLNELRSLMPES---YVQRGDQASIVGAAINFVKELE 210
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.59E-13157214No hitNo description
Gene3DG3DSA:4.10.280.107.4E-14157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.783158209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16158224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MALEAAVYQQ DLFGHNNGTN KDLYPLLLES WSDSNDNFFP YLKLQDHNNH ENSYSTINDF  60
DPTNYFLDSQ LVELDWHSYY YHHGINHESI ISPSPLCTVN DLPSLNNYDH DCWGLISSSA  120
NHQPKAANES DGVPTEMVVR PKQRRRARAK KNKEEIENQR MTHIAVERNR RKQMNEYLNE  180
LRSLMPESYV QRGDQASIVG AAINFVKELE HNLQSLSAKK QMKENVNTDG SSSSSSLPFR  240
EFFTFPQFSS IGDNNNEDHT SSGSSISQQQ QLANAGGVQG GWLGADVEVT MVESHAHLKI  300
RLRRPPKQLS KLVSGLHSSR LSILHLNVTT ADDGVVLYSF SLKVEDGSKL SSVDDIARAV  360
YLLLGRIQEE TNSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159170RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694628.10.0PREDICTED: transcription factor bHLH94
SwissprotQ9C7T47e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0J8BBG70.0A0A0J8BBG7_BETVU; Uncharacterized protein
STRINGXP_010694628.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]