PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_096500_rtgn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 548aa    MW: 59712.9 Da    PI: 5.215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_096500_rtgn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-13313364155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A+e++++L+
  Bv4_096500_rtgn.t1 313 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 364
                         79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.99E-14311368No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13311367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16312377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288312363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10313364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9318369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQKEENYTGA SEYEAGGRFG IANDVDNSSV APNPTYHHQG GPGPLLSYHQ PEAEAEVQGQ  60
GHNHIIHGSG SGSGSGSVVV DYMLNDPINN AIPSRTAYHH HEQPINCVSG RGYADRTGLS  120
FADVMQFADF GPKLGLNRFQ QHQQDDESTK TNTMIPGNGI DPVYFLKFPV LGNSGNTSSI  180
HDDRNHSITD REGGFGDPLE DLREYSYDHQ QEDASAAAAA GVLLTAGTSN NSLSNYTNPV  240
QLEFLGNTHD VNDLMDLSTG EKSGANVELE GMEAGGEGAV AAAAAMGHNK SSSSSSKRKR  300
PRTIKTNEEV ESQRMTHIAV ERNRRKQMNE HLRVLRSLMP SSYVQRGDQA SIIGGAIEFV  360
RELEQLLQCL ESQKRRRLYG DQGRPIAMGD SNSNSSSSTT VLGVGLVQQM PQVQPPLALA  420
FTPPNHQAQD DDQLRLLVDH QLDPDSSLLP EETAESKSCI ADVEVKVLGF DALIKILSRR  480
RPGQLIKAIA ALEDLHFTIL HTNITTIEQT VLYSFNVKVA NEARFTADDI ASSVQQIFTF  540
IHSNTNIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313324RMTHIAVERNRR
2373377KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694945.10.0PREDICTED: transcription factor FAMA isoform X2
TrEMBLA0A0J8BDA00.0A0A0J8BDA0_BETVU; Uncharacterized protein
STRINGXP_010694945.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.14e-88bHLH family protein