PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_096650_oxms.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 241aa MW: 27619.8 Da PI: 5.3795

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_096650_oxms.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	3.1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yLk+k++g+k++l e+i+e+d+y++ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWk+tgkd Bv4_096650_oxms.t1 6 LPPGFRFHPTDEELVAYYLKRKINGHKIDL-EIIPEIDLYQFEPWELPsKsLLPSNDLEWYFFSPRDRKYPNGSRTNRATKAGYWKSTGKD 95 79**************************.99***********5334455677***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s + ++vg+kktLv+y+grap+g++tdWvmheyrl Bv4_096650_oxms.t1 96 RKVNS-QMRAVGMKKTLVYYQGRAPNGHRTDWVMHEYRL 133 *.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.385	6	156	IPR003441	NAC domain
Pfam	PF02365	5.9E-31	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MAPVALPPGF RFHPTDEELV AYYLKRKING HKIDLEIIPE IDLYQFEPWE LPSKSLLPSN 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK STGKDRKVNS QMRAVGMKKT LVYYQGRAPN 120 GHRTDWVMHE YRLDEGECEI ASGLQDAYAL CRVFKKTPTT ISNNIATSPQ EHSFTSIVQM 180 ASDQSSSIDI YSEGRCDDFE SSDYSVPIER CSTSFTHGSS SSLCDIGDGQ WMQYLNEEEF 240 C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-59	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-59	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-59	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-59	1	156	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-59	1	156	15	168	NAC domain-containing protein 19
3swm_B	1e-59	1	156	15	168	NAC domain-containing protein 19
3swm_C	1e-59	1	156	15	168	NAC domain-containing protein 19
3swm_D	1e-59	1	156	15	168	NAC domain-containing protein 19
3swp_A	1e-59	1	156	15	168	NAC domain-containing protein 19
3swp_B	1e-59	1	156	15	168	NAC domain-containing protein 19
3swp_C	1e-59	1	156	15	168	NAC domain-containing protein 19
3swp_D	1e-59	1	156	15	168	NAC domain-containing protein 19
4dul_A	1e-59	1	156	12	165	NAC domain-containing protein 19
4dul_B	1e-59	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694972.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	Q9FFI5	6e-89	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0J8BD88	0.0	A0A0J8BD88_BETVU; Uncharacterized protein
STRING	XP_010694972.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	3e-98	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]