PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_097990_fpfn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 365aa    MW: 42240.4 Da    PI: 7.0177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_097990_fpfn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.3e-5671361129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeelv++yL+kk++++k++l +vik+vd+yk+ePwdL++  k+ +ee+ ewyfFs++dkky+tg+r+nratk+g+Wkatg+
  Bv5_097990_fpfn.t1   7 VPPGFRFHPTDEELVDYYLRKKIAARKIDL-DVIKDVDLYKIEPWDLQElcKIGSEEQhEWYFFSHKDKKYPTGTRTNRATKAGFWKATGR 96 
                         69****************************.9***************954555554445******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         dk+++  k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Bv5_097990_fpfn.t1  97 DKAIYL-KHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                         ******.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-606156IPR003441NAC domain
PROSITE profilePS5100559.5497156IPR003441NAC domain
PfamPF023656.5E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDTFAHVPPG FRFHPTDEEL VDYYLRKKIA ARKIDLDVIK DVDLYKIEPW DLQELCKIGS  60
EEQHEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLKHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNET GTPQEEGWVV CRVFKKRMAT VRKLDGSPCW YDDQVSFMHD  180
MDSPRRIPHH PNYHAPNNNF HNHNMYPCKQ ELEIPPYNMS HHDQFLQLPQ LESPKMPQAS  240
VQNCSSIQPY GSSMNMHSSS MLTQDQIIHS QPLNSIYGNN FGGVVDQVTD WRVLDKFVAS  300
QLSQDEHGPP GPSKESNYSN APIFPESEHM NMVISPNSNK QDNLGMSSDQ YASTSTSSCQ  360
IDMWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-49615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676181.10.0PREDICTED: NAC domain-containing protein 7 isoform X1
SwissprotQ9FWX21e-147NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0K9QW380.0A0A0K9QW38_SPIOL; Uncharacterized protein
STRINGXP_010676181.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-145NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]