PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_097990_fpfn.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 360aa MW: 41653.7 Da PI: 7.0215

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_097990_fpfn.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.5	8.6e-56	7	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv++yL+kk++++k++l +vik+vd+yk+ePwdL+ ++e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+ Bv5_097990_fpfn.t2 7 VPPGFRFHPTDEELVDYYLRKKIAARKIDL-DVIKDVDLYKIEPWDLQ--GSEEQHEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKA 94 69**************************.9***********8..345778******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle Bv5_097990_fpfn.t2 95 IYL-KHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 131 .8899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-60	6	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.333	7	151	IPR003441	NAC domain
Pfam	PF02365	5.4E-29	8	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MDTFAHVPPG FRFHPTDEEL VDYYLRKKIA ARKIDLDVIK DVDLYKIEPW DLQGSEEQHE 60 WYFFSHKDKK YPTGTRTNRA TKAGFWKATG RDKAIYLKHS LIGMRKTLVF YKGRAPNGQK 120 SDWIMHEYRL ETNETGTPQE EGWVVCRVFK KRMATVRKLD GSPCWYDDQV SFMHDMDSPR 180 RIPHHPNYHA PNNNFHNHNM YPCKQELEIP PYNMSHHDQF LQLPQLESPK MPQASVQNCS 240 SIQPYGSSMN MHSSSMLTQD QIIHSQPLNS IYGNNFGGVV DQVTDWRVLD KFVASQLSQD 300 EHGPPGPSKE SNYSNAPIFP ESEHMNMVIS PNSNKQDNLG MSSDQYASTS TSSCQIDMWK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MDTFAHVPPG FRFHPTDEEL VDYYLRKKIA ARKIDLDVIK DVDLYKIEPW DLQGSEEQHE  60
WYFFSHKDKK YPTGTRTNRA TKAGFWKATG RDKAIYLKHS LIGMRKTLVF YKGRAPNGQK  120
SDWIMHEYRL ETNETGTPQE EGWVVCRVFK KRMATVRKLD GSPCWYDDQV SFMHDMDSPR  180
RIPHHPNYHA PNNNFHNHNM YPCKQELEIP PYNMSHHDQF LQLPQLESPK MPQASVQNCS  240
SIQPYGSSMN MHSSSMLTQD QIIHSQPLNS IYGNNFGGVV DQVTDWRVLD KFVASQLSQD  300
EHGPPGPSKE SNYSNAPIFP ESEHMNMVIS PNSNKQDNLG MSSDQYASTS TSSCQIDMWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	7	152	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	7	152	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	7	152	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	7	152	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	7	152	20	169	NAC domain-containing protein 19
3swm_B	1e-47	7	152	20	169	NAC domain-containing protein 19
3swm_C	1e-47	7	152	20	169	NAC domain-containing protein 19
3swm_D	1e-47	7	152	20	169	NAC domain-containing protein 19
3swp_A	1e-47	7	152	20	169	NAC domain-containing protein 19
3swp_B	1e-47	7	152	20	169	NAC domain-containing protein 19
3swp_C	1e-47	7	152	20	169	NAC domain-containing protein 19
3swp_D	1e-47	7	152	20	169	NAC domain-containing protein 19
4dul_A	1e-47	7	152	17	166	NAC domain-containing protein 19
4dul_B	1e-47	7	152	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676182.1	0.0	PREDICTED: NAC domain-containing protein 7 isoform X2
Swissprot	Q9FWX2	1e-140	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A0K9QW38	0.0	A0A0K9QW38_SPIOL; Uncharacterized protein
STRING	XP_010676181.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-138	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]