PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_098400_xfou.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 669aa    MW: 73275.6 Da    PI: 6.8677
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_098400_xfou.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093974341954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Bv5_098400_xfou.t1 397 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 434
                         554459******************************88 PP
2BELL993.7e-32255325172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqe+ +kk+kL+++l+e ++rY+qy++q+q+vi sFe+ a +gsak Yt+lAlk+iS++FrcLkdai +qi
  Bv5_098400_xfou.t1 255 ERQEILMKKTKLVTMLDEAEQRYRQYNHQMQIVIESFEQGA-VGSAKTYTALALKTISKQFRCLKDAIQGQI 325
                         799************************************76.8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-48165323IPR006563POX domain
PfamPF075267.4E-41171321IPR006563POX domain
PROSITE profilePS5007112.115375438IPR001356Homeobox domain
SMARTSM003896.3E-10378442IPR001356Homeobox domain
CDDcd000862.98E-12378439No hitNo description
SuperFamilySSF466894.23E-17379445IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-29381444IPR009057Homeodomain-like
PfamPF059202.6E-18395434IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAAYYHNHHH HNHINNNNNN NPVTNSEIQD HSTNNFHTLI LMNPNLAESQ QQQHQQLQSQ  60
QLTTASSQSH NILLLNSAAT AAAAAAAAAA TLSPPQPLLS HHHHFVRLPT SSPPESNNIT  120
LYGYPSHEAR DMPRARQGLS LSLSSQNHTI AGGSHQGGDG NMGSTGGHNS IYGSKYLKAA  180
QELLEEVVHL GDHNSTSVIY KNNTSTTTNT NNDNDNDGSI KKYGGESPSN ERDGGRGGGG  240
GGGGGGGGGQ LSTAERQEIL MKKTKLVTML DEAEQRYRQY NHQMQIVIES FEQGAVGSAK  300
TYTALALKTI SKQFRCLKDA IQGQIRAANK TLGDDQEGGS GSLAGGKIEG SRLKYIDHQI  360
RQQRALQQLG MIQNPNAWRP QRGLPERSVS VLRAWLFEHF LHPYPKDSDK IMLAKQTGLT  420
RSQVSNWFIN ARVRLWKPMI EEMYTEELKE QERLSEEKLG NSSKENSNNE NDSGALNYIN  480
NQEKTNIIAG NHQVNNCKEQ NNATASTSSF ISIPSGNNTT MANQNQHGFT LSSSLDMEDA  540
GISPRGPKRQ RNDDQVLRYD ESNNGEIMIK FGNEKQGREN ENGYPIISGG MNFIGMGGGD  600
LGTYPIGEIG RFETEDFSPQ PRFLHGNGIS LSLGLPPSCE NHPQQLENLS ATNHTFLSPN  660
HTFLSPSFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16384441158Homeobox protein Meis1
4xrs_B4e-16384441158Homeobox protein Meis1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233241GGRGGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676226.10.0PREDICTED: BEL1-like homeodomain protein 1 isoform X1
TrEMBLA0A0K9QEZ80.0A0A0K9QEZ8_SPIOL; Uncharacterized protein
STRINGXP_010676226.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-113BEL1-like homeodomain 1