PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_098930_sojm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 337aa    MW: 37225.4 Da    PI: 8.1844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_098930_sojm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-18115165256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Bv5_098930_sojm.t1 115 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAETAAYAYDRAAYKLRGE 165
                         59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-21114174No hitNo description
SuperFamilySSF541714.71E-22115172IPR016177DNA-binding domain
PROSITE profilePS5103222.998115172IPR001471AP2/ERF domain
SMARTSM003806.5E-34115178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-31115173IPR001471AP2/ERF domain
PfamPF008471.7E-12116165IPR001471AP2/ERF domain
PRINTSPR003676.4E-10116127IPR001471AP2/ERF domain
PRINTSPR003676.4E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEDNSFLCSS FTTSIDIKDS VSALILTAGA NNTNTLDSIF SYCPPSNPIT NSNDPLIESL  60
GSSVYLKQRD LLQKFWLNNL SKNKIHGSSS LSSQLLQSSS FGVNSQINNP GKKKLYRGVR  120
QRHWGKWVAE IRLPQNRMRV WLGTYETAET AAYAYDRAAY KLRGEYARLN FPNLKDTTKL  180
GFGDSARMNA VKSAVDSKIQ AICQKLKRER ANRIAKKKPK EADTSHSDGV DGVGGRGNDG  240
NSNTHSGDSN LKENDSLMKD SYSSSSSSFC STMVNDSRMV SPSISEEGWW SNGNGTSPSS  300
DSMTSYPMMA DEFGFNDCSL EKMPSFDPEL IWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21114172160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676304.10.0PREDICTED: ethylene-responsive transcription factor ERF061
TrEMBLA0A0K9RJ211e-163A0A0K9RJ21_SPIOL; Uncharacterized protein
STRINGXP_010676304.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-54ERF family protein