PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_099430_qqci.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 357aa    MW: 39874.4 Da    PI: 6.377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_099430_qqci.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19133183155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Bv5_099430_qqci.t1 133 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 183
                         59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.63E-32133190No hitNo description
PROSITE profilePS5103223.327134191IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21134191IPR016177DNA-binding domain
PfamPF008472.2E-12134183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-30134191IPR001471AP2/ERF domain
SMARTSM003805.0E-37134197IPR001471AP2/ERF domain
PRINTSPR003674.0E-10135146IPR001471AP2/ERF domain
PRINTSPR003674.0E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MESHIFPSSI KFTEHKNHTI LVHKQIRTKS SSQNNYYPKI VRISVTDADA TDSSGEEDEQ  60
NSSYNFQRRR RRIKRFINEV NIEPCSTSSA FSTTTEPEYA VLPANNGVDL KRPKKKKKKC  120
SPVKQVLHGH GGKKFRGVRQ RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AMVYDNAAIQ  180
LRGPHALTNF STPPPPPPPT PKKLSLSSTS SSDYDDGSHL HTPSIYSPTS VLRFQPEPEP  240
EPVSPRVEPV LVKEEKLQEC QTLGPTPTTL SSSSPYVSCF DSLFPSDFFD FDGTVPDLFE  300
DSGFGSEDGH VFGHDCKADM LFNGGDDFDL FGSSGWSSHD YFPDIGDIFG SDPLVAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21132190362ATERF1
3gcc_A2e-21132190362ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118KRPKKKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676352.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A0K9RK751e-132A0A0K9RK75_SPIOL; Uncharacterized protein
STRINGXP_010676352.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-45cytokinin response factor 4