PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_101120_supk.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

ERF

Protein Properties

Length: 748aa MW: 82943.7 Da PI: 7.6892

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_101120_supk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.7	2.2e-16	573	623	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +rWv+e+r p n+ + r++lg++ tae+Aa+a++ a++ l+g Bv5_101120_supk.t1 573 PVYRGVRQRN-GNRWVCEVRAP--NN-KSRIWLGTYPTAEMAARAHDVAALTLKG 623 68***999.9**9998..33.6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR00879	1.3E-118	15	485	IPR003663	Sugar/inositol transporter
PROSITE profile	PS50850	51.617	27	478	IPR020846	Major facilitator superfamily domain
CDD	cd06174	8.48E-34	28	448	IPR020846	Major facilitator superfamily domain
Pfam	PF00083	1.8E-127	28	489	IPR005828	Major facilitator, sugar transporter-like
SuperFamily	SSF103473	1.83E-60	29	484	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	1.5E-24	34	231	No hit	No description
PRINTS	PR00171	3.7E-32	35	45	IPR003663	Sugar/inositol transporter
PRINTS	PR00171	3.7E-32	138	157	IPR003663	Sugar/inositol transporter
PROSITE pattern	PS00217	0	143	168	IPR005829	Sugar transporter, conserved site
Gene3D	G3DSA:1.20.1250.20	4.7E-15	282	484	No hit	No description
PRINTS	PR00171	3.7E-32	294	304	IPR003663	Sugar/inositol transporter
PROSITE pattern	PS00216	0	338	355	IPR005829	Sugar transporter, conserved site
PRINTS	PR00171	3.7E-32	391	412	IPR003663	Sugar/inositol transporter
PRINTS	PR00171	3.7E-32	414	426	IPR003663	Sugar/inositol transporter
Pfam	PF00847	2.4E-12	573	623	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-23	574	637	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.66E-19	574	633	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.43	574	631	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-29	574	633	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-7	575	586	IPR001471	AP2/ERF domain
CDD	cd00018	6.69E-26	575	633	No hit	No description
PRINTS	PR00367	4.9E-7	597	613	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0022891	Molecular Function	substrate-specific transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MAGGVIFDGA KEGKDYPGKL TAYVFLSCLL AAAGGLIFGY DIGISGGVTS MPMFLEKFFP 60 SVYRQQMENS GTNQYCKFNS TKLTMFTSSL YLAALIASVV ASTVTRKLGR KMSMFFGGLL 120 FCVGAIINAA AQNVAMLIIG RILLGFGIGF ANQSVPVFLS EMAPYKHRGA LNMMFQLTIT 180 IGILIANLLN YRFAKIEHYG WRLSLGGAVV PALIILVGAL ILPETPNSLI ERGKLEEAKK 240 MLRKIRGVDN VETELQDLIA ASEASKKVKH PWRSLLKKQY RPPLIFSIAI PMFQQLTGIN 300 VIMFYAPVLF KTIGFGSNAS LMSAVITGGV NVIATLVSIY GVDKWGRRSL FLEGGVQMLI 360 FQILVTIFIG WKFGVTGNAT DLPQWYALLV VAFICIYVAG FAWSWGPLGW LVPSEIFPLE 420 VRSAAQSINV SVNMIFTFAI AQAFLPMLCA MKFGLFIFFA FFVVVMTIFI YILLPETKNV 480 PIEEMVIVWK NHKFWSNFIP EDVIPPELKV LYLLGLYATV FLVGCFDVAE PWSSDEDVTV 540 DFRASHSDDE VVLATSCPKK RAGRKKVKET RHPVYRGVRQ RNGNRWVCEV RAPNNKSRIW 600 LGTYPTAEMA ARAHDVAALT LKGRAACLNF ADSAWRLRVP TSTDTRDIQK AAAEAAEAFR 660 GEEEEGESQH NVGESSRIND NIMEVFTDGN QVNNQLLQNN AEYMDDEEVF GMPGLLANMA 720 EGLLLPPPHN QYDTESDCEE FSLWSYSI

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MAGGVIFDGA KEGKDYPGKL TAYVFLSCLL AAAGGLIFGY DIGISGGVTS MPMFLEKFFP  60
SVYRQQMENS GTNQYCKFNS TKLTMFTSSL YLAALIASVV ASTVTRKLGR KMSMFFGGLL  120
FCVGAIINAA AQNVAMLIIG RILLGFGIGF ANQSVPVFLS EMAPYKHRGA LNMMFQLTIT  180
IGILIANLLN YRFAKIEHYG WRLSLGGAVV PALIILVGAL ILPETPNSLI ERGKLEEAKK  240
MLRKIRGVDN VETELQDLIA ASEASKKVKH PWRSLLKKQY RPPLIFSIAI PMFQQLTGIN  300
VIMFYAPVLF KTIGFGSNAS LMSAVITGGV NVIATLVSIY GVDKWGRRSL FLEGGVQMLI  360
FQILVTIFIG WKFGVTGNAT DLPQWYALLV VAFICIYVAG FAWSWGPLGW LVPSEIFPLE  420
VRSAAQSINV SVNMIFTFAI AQAFLPMLCA MKFGLFIFFA FFVVVMTIFI YILLPETKNV  480
PIEEMVIVWK NHKFWSNFIP EDVIPPELKV LYLLGLYATV FLVGCFDVAE PWSSDEDVTV  540
DFRASHSDDE VVLATSCPKK RAGRKKVKET RHPVYRGVRQ RNGNRWVCEV RAPNNKSRIW  600
LGTYPTAEMA ARAHDVAALT LKGRAACLNF ADSAWRLRVP TSTDTRDIQK AAAEAAEAFR  660
GEEEEGESQH NVGESSRIND NIMEVFTDGN QVNNQLLQNN AEYMDDEEVF GMPGLLANMA  720
EGLLLPPPHN QYDTESDCEE FSLWSYSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6h7d_A	0.0	20	504	22	505	Sugar transport protein 10
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. {ECO:0000269\|PubMed:11135118, ECO:0000269\|PubMed:1633849, ECO:0000269\|PubMed:2209537, ECO:0000269\|PubMed:7920712, ECO:0000269\|PubMed:8051137}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strong increase at the onset of the dark period followed by a progressive decrease. Transient increase at midday. {ECO:0000269\|PubMed:12972665}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676976.1	0.0	PREDICTED: sugar transport protein 1-like
Swissprot	P23586	0.0	STP1_ARATH; Sugar transport protein 1
TrEMBL	A0A0K9RXW0	0.0	A0A0K9RXW0_SPIOL; Uncharacterized protein
STRING	XP_010676976.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	5e-64	C-repeat/DRE binding factor 1

Publications ? help Back to Top
Sherson SM, et al. Monosaccharide/proton symporter AtSTP1 plays a major role in uptake and response of Arabidopsis seeds and seedlings to sugars. Plant J., 2000. 24(6): p. 849-57 [PMID:11135118] Sherson SM,Alford HL,Forbes SM,Wallace G,Smith SM Roles of cell-wall invertases and monosaccharide transporters in the growth and development of Arabidopsis. J. Exp. Bot., 2003. 54(382): p. 525-31 [PMID:12508063] Stadler R, et al. Diurnal and light-regulated expression of AtSTP1 in guard cells of Arabidopsis. Plant Physiol., 2003. 133(2): p. 528-37 [PMID:12972665] Marmagne A, et al. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Mol. Cell Proteomics, 2004. 3(7): p. 675-91 [PMID:15060130] Nühse TS,Stensballe A,Jensen ON,Peck SC Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell, 2004. 16(9): p. 2394-405 [PMID:15308754] Boorer KJ,Forde BG,Leigh RA,Miller AJ Functional expression of a plant plasma membrane transporter in Xenopus oocytes. FEBS Lett., 1992. 302(2): p. 166-8 [PMID:1633849] Wormuth D, et al. Regulation of gene expression by photosynthetic signals triggered through modified CO2 availability. BMC Plant Biol., 2006. 6: p. 15 [PMID:16916444] Johnson DA,Hill JP,Thomas MA The monosaccharide transporter gene family in land plants is ancient and shows differential subfamily expression and expansion across lineages. BMC Evol. Biol., 2006. 6: p. 64 [PMID:16923188] Marmagne A, et al. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Mol. Cell Proteomics, 2007. 6(11): p. 1980-96 [PMID:17644812] Hem S,Rofidal V,Sommerer N,Rossignol M Novel subsets of the Arabidopsis plasmalemma phosphoproteome identify phosphorylation sites in secondary active transporters. Biochem. Biophys. Res. Commun., 2007. 363(2): p. 375-80 [PMID:17869214] Szenthe A,Schäfer H,Hauf J,Schwend T,Wink M Characterisation and expression of monosaccharide transporters in lupins, Lupinus polyphyllus and L. albus. J. Plant Res., 2007. 120(6): p. 697-705 [PMID:17882353] Chaudhuri B, et al. Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips. Plant J., 2008. 56(6): p. 948-62 [PMID:18702670] Hsu JL, et al. Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana. Proteome Sci, 2009. 7: p. 42 [PMID:19900291] Yamada K, et al. Monosaccharide absorption activity of Arabidopsis roots depends on expression profiles of transporter genes under high salinity conditions. J. Biol. Chem., 2011. 286(50): p. 43577-86 [PMID:22041897] Sauer N,Friedländer K,Gräml-Wicke U Primary structure, genomic organization and heterologous expression of a glucose transporter from Arabidopsis thaliana. EMBO J., 1990. 9(10): p. 3045-50 [PMID:2209537] Cordoba E,Aceves-Zamudio DL,Hernández-Bernal AF,Ramos-Vega M,León P Sugar regulation of SUGAR TRANSPORTER PROTEIN 1 (STP1) expression in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(1): p. 147-59 [PMID:25281700] Veillet F,Gaillard C,Coutos-Thévenot P,La Camera S Targeting the AtCWIN1 Gene to Explore the Role of Invertases in Sucrose Transport in Roots and during Botrytis cinerea Infection. Front Plant Sci, 2016. 7: p. 1899 [PMID:28066461] Yamada K,Osakabe Y,Yamaguchi-Shinozaki K A C-terminal motif contributes to the plasma membrane localization of Arabidopsis STP transporters. PLoS ONE, 2017. 12(10): p. e0186326 [PMID:29028820] Otori K,Tanabe N,Tamoi M,Shigeoka S Sugar Transporter Protein 1 (STP1) contributes to regulation of the genes involved in shoot branching via carbon partitioning in Arabidopsis. Biosci. Biotechnol. Biochem., 2019. 83(3): p. 472-481 [PMID:30488772] Miller AJ,Smith SJ,Theodoulou FL The heterologous expression of H(+)-coupled transporters in Xenopus oocytes. Symp. Soc. Exp. Biol., 1994. 48: p. 167-77 [PMID:7597641] Stolz J,Stadler R,Opekarová M,Sauer N Functional reconstitution of the solubilized Arabidopsis thaliana STP1 monosaccharide-H+ symporter in lipid vesicles and purification of the histidine tagged protein from transgenic Saccharomyces cerevisiae. Plant J., 1994. 6(2): p. 225-33 [PMID:7920712] Boorer KJ,Loo DD,Wright EM Steady-state and presteady-state kinetics of the H+/hexose cotransporter (STP1) from Arabidopsis thaliana expressed in Xenopus oocytes. J. Biol. Chem., 1994. 269(32): p. 20417-24 [PMID:8051137]