PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_101230_ugwa.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 308aa    MW: 34929.2 Da    PI: 6.9671
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_101230_ugwa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.49.9e-082572902154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp+++++++L +++gL+ +q+ +WF N+R +
  Bv5_101230_ugwa.t1 257 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 290
                         469*****************************87 PP
2ELK25.43.2e-09211232122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK +L++++++++ ++++E++
  Bv5_101230_ugwa.t1 211 ELKIELKQGFKSRIEDVREEIL 232
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-192872IPR005540KNOX1
PfamPF037901.4E-173071IPR005540KNOX1
SMARTSM012564.3E-2499154IPR005541KNOX2
PfamPF037911.1E-18104153IPR005541KNOX2
PROSITE profilePS512139.132211231IPR005539ELK domain
PROSITE profilePS5007111.629231294IPR001356Homeobox domain
SMARTSM003894.3E-11233298IPR001356Homeobox domain
SuperFamilySSF466894.71E-16233298IPR009057Homeodomain-like
CDDcd000861.17E-10234295No hitNo description
Gene3DG3DSA:1.10.10.601.8E-25238297IPR009057Homeodomain-like
PfamPF059201.1E-17251290IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMGGGSGGGG GGISGLMGGD IAFSDHYRQL KAEIATHPLY EQLLSAHVSC LRVATPIDQL  60
PLIDAQLNQS QSLLRSYVTQ HNYSHSLSPH ERQEHNHSHS LSSHQRQELD NFLAQYLLVL  120
CSFKEQLQNH VRVHAVEAVM ACREIEQNLQ NLTGATLGEG TGATMSDDED ELQLEYSMDQ  180
SSGGEVHDMM GFGPLLPTES ERSLMERVRH ELKIELKQGF KSRIEDVREE ILRKRRAGKL  240
PGDTTSVLKA WWQQHSKWPY PTEDDKAKLV EETGLQLKQI NNWFINQRKR NWHNNSQSAN  300
TLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287307RKRNWHNNSQSANTLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676578.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-156KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0K9RVV30.0A0A0K9RVV3_SPIOL; Uncharacterized protein
STRINGXP_010676578.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-146KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]