PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_102030_ozsw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 342aa    MW: 38253.6 Da    PI: 7.2707
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_102030_ozsw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-1077102127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt+lC  f+  G+C+ G++C+FaHg+
  Bv5_102030_ozsw.t1  77 YKTRLCAKFRM-GQCRNGENCNFAHGE 102
                         9**********.*************96 PP
2zf-CCCH29.21.6e-09140163225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         k++lC+ f+ + +C+yGdrC+F H
  Bv5_102030_ozsw.t1 140 KMKLCKKFYNGEECPYGDRCNFLH 163
                         789*******66************ PP
3zf-CCCH41.22.7e-13232258127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC  f  tG+C++Gd+C+FaHg+
  Bv5_102030_ozsw.t1 232 WKTKLCTKFEITGHCPFGDNCHFAHGQ 258
                         8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.6E-1671109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-875107IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-676102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.12676103IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-877102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-7138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685138166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025138165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-9140165IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7140163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-16228261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-10230261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.023231259IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7231258IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-11232258IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSFSDPFPPF VPFPNGLDSM GYWSHFSNEQ PEVNSEYDHD NPPLKRPKNS GDDQSMNHNH  60
RTTSNPPVNQ PTGKIFYKTR LCAKFRMGQC RNGENCNFAH GEEDLRKPPP NWQELVGGRA  120
EDRGNSGGEN WEDDDRIIHK MKLCKKFYNG EECPYGDRCN FLHKEPAKFR ESSVVRFRDS  180
SRESSAISIG TTGPPMVQAR VNDQFEVNRM PGNANGIAAV DASRGNSRPV YWKTKLCTKF  240
EITGHCPFGD NCHFAHGQAE LLLPGGRPAE AEAAVVSFPP LKPAHAPAND PNAVKIDAGV  300
SSSQEGQGKK CFLKWKGTKK INRIYGDWID DLPFNLPNEV ES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676669.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT815e-87C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0K9R3T91e-177A0A0K9R3T9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676669.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-89C3H family protein