PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_102100_yqwd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 377aa    MW: 43518.7 Da    PI: 8.6235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_102100_yqwd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014127149123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C  Cg+ F+ ++ L +H + H
  Bv5_102100_yqwd.t1 127 YVCRVCGRKFNINEKLISHFMIH 149
                         9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10108.5E-846128IPR029060PIN domain-like
SuperFamilySSF576676.83E-6125153No hitNo description
PROSITE profilePS5015711.552127154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-6129151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
CDDcd061671.08E-13200278No hitNo description
PfamPF019364.7E-8200278IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10108.5E-8211266IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLPMVIHKCR RSLHQFHVPY LEFARYCHFE QHPSFYSSNS TLVKLPQSKI GLFWDLDNKT  60
PNSVSPFEAA IKLKRAVSSF GIVRYMIAYA NQHTFSYVPP AVKVFRNQRK VLNHLENKGI  120
IESVEPYVCR VCGRKFNINE KLISHFMIHQ REHQKRLKQI ESAKGKKRVD LVGKYAMKME  180
KYKNAARDIL TPKVGYGLGE DLRRAGFWVK TVSDEPQAAD VALRSHMVDM MDHRRMQCLV  240
LVSDDSDFLG VLKEARERCL KTVVVGDNDD GVLKRNADAS FSWREILIGK AKKQAVSVVG  300
QWKDRDILKR LEWSYGPKLK RDADKGNNEC DFEDVHSEDE EAEDSIEEDD DPLLRKDDKP  360
WWELDTNVDG ASSNSLT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676677.10.0PREDICTED: uncharacterized protein LOC104892439
RefseqXP_010676678.10.0PREDICTED: uncharacterized protein LOC104892439
RefseqXP_010676679.10.0PREDICTED: uncharacterized protein LOC104892439
TrEMBLA0A0K9QM030.0A0A0K9QM03_SPIOL; Uncharacterized protein
STRINGXP_010676677.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-130C2H2 family protein