PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_103040_exem.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 256aa    MW: 28844.1 Da    PI: 9.4968
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_103040_exem.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12194216426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +C+++ +tG+C yGd+CkF+H+
  Bv5_103040_exem.t1 194 DICKDYKETGYCGYGDSCKFMHD 216
                         79********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-9189221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483190218IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7190217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-12191221IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10193216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSDSYAKLEL QKLVPVCNFV RKPMKNKNIR KRPSALDEVE DDDKESSVLH TAKRADVSDN  60
KLYFSSGTSK RSASAESTKS SKNVLFQYES SKEIQVQNDS KATATLETET DFSRDARAIR  120
ERALKKAEEA LKGKGKSKTS GDGKVYKGIN SYTDYRAGFR REQTLAAEKA GGAHGPLRAS  180
AHIRVSARFD FQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW DDAEKLRKRN  240
LALGGHSDED NAEHKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M9e-378423398239RING finger protein 113A
5z58_M9e-378423398239RING finger protein 113A
6ff4_t9e-378423398239RING finger protein 113A
6ff7_t9e-378423398239RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104756.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X2
SwissprotQ8GX841e-110C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0J8B5U21e-163A0A0J8B5U2_BETVU; Uncharacterized protein
STRINGXP_010667731.11e-164(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-89C3H family protein