PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_103040_exem.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C3H

Protein Properties

Length: 233aa MW: 26195.9 Da PI: 9.3833

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_103040_exem.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.3e-12	171	193	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++ +tG+C yGd+CkF+H+ Bv5_103040_exem.t2 171 DICKDYKETGYCGYGDSCKFMHD 193 79********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.62E-9	166	198	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.2E-7	167	194	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.483	167	195	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-12	168	198	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.0E-10	170	193	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MKNKNIRKRP SALDEVEDDD KESSVLHTAK RADVSDNKLY FSSGTSKRSA SAESTKSSKN 60 VLFQYESSKE IQVQNDSKAT ATLETETDFS RDARAIRERA LKKAEEALKG KGKSKTSGDG 120 KVYKGINSYT DYRAGFRREQ TLAAEKAGGA HGPLRASAHI RVSARFDFQP DICKDYKETG 180 YCGYGDSCKF MHDRGDYKSG WQMEKEWDDA EKLRKRNLAL GGHSDEDNAE HKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	3e-37	61	210	98	239	RING finger protein 113A
5z58_M	3e-37	61	210	98	239	RING finger protein 113A
6ff4_t	3e-37	61	210	98	239	RING finger protein 113A
6ff7_t	3e-37	61	210	98	239	RING finger protein 113A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019104756.1	1e-171	PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X2
Swissprot	Q8GX84	1e-105	C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBL	A0A0J8B5U2	1e-156	A0A0J8B5U2_BETVU; Uncharacterized protein
STRING	XP_010667731.1	1e-157	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-84	C3H family protein