PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_103110_knze.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 359aa MW: 41166.7 Da PI: 6.2325

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_103110_knze.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.4	3.7e-29	77	129	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG++ +tPk +l+lm++kgL+++hvkSHLQ+YR+ Bv5_103110_knze.t2 77 PRLRWTPDLHLRFIHAVERLGGQD-TTPKLVLQLMNIKGLSIAHVKSHLQMYRS 129 8*****************9998.9*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-29	73	130	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.918	73	132	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-15	74	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-21	77	131	IPR006447	Myb domain, plants
Pfam	PF00249	8.4E-10	78	128	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MLESNNQIEC SKTNLCDEEA EDQDEEENDE NDEGTTQNTN SKNGGSSSNS TVEEMSDGMK 60 RSSSSTAVRP YIRSKTPRLR WTPDLHLRFI HAVERLGGQD TTPKLVLQLM NIKGLSIAHV 120 KSHLQMYRSK KAEDQSQATC DQKHIFEVRD CNIFNLSQLP LLQGYCQAPS SNYRSIDPMW 180 TTTNPSWTRG LYTADMESRV NENVWQRFGI EQHPPRIIEQ IHQQAWQKPG ISPMAKDLSL 240 TMQHHHQYQA KVDQKRFISC NSNDSLHKQI LLKRKRLECD DHGNIDLNLS LKIPRTQSED 300 HDHEGCNTIL NDEVDKSSLL SLSSSLKFEF KVKDGDYDHG DRNKQEYCTR GTSTLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MLESNNQIEC SKTNLCDEEA EDQDEEENDE NDEGTTQNTN SKNGGSSSNS TVEEMSDGMK  60
RSSSSTAVRP YIRSKTPRLR WTPDLHLRFI HAVERLGGQD TTPKLVLQLM NIKGLSIAHV  120
KSHLQMYRSK KAEDQSQATC DQKHIFEVRD CNIFNLSQLP LLQGYCQAPS SNYRSIDPMW  180
TTTNPSWTRG LYTADMESRV NENVWQRFGI EQHPPRIIEQ IHQQAWQKPG ISPMAKDLSL  240
TMQHHHQYQA KVDQKRFISC NSNDSLHKQI LLKRKRLECD DHGNIDLNLS LKIPRTQSED  300
HDHEGCNTIL NDEVDKSSLL SLSSSLKFEF KVKDGDYDHG DRNKQEYCTR GTSTLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-14	78	131	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-14	78	131	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-14	78	131	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-14	78	131	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-14	78	131	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-14	78	131	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-14	78	131	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-14	78	131	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676797.1	0.0	PREDICTED: uncharacterized protein LOC104892532 isoform X3
TrEMBL	A0A0K9RXN8	1e-118	A0A0K9RXN8_SPIOL; Uncharacterized protein
STRING	XP_010676795.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	9e-48	G2-like family protein