PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_103360_emgs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 327aa    MW: 36589.3 Da    PI: 4.7901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_103360_emgs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1775134155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr   s+  ++   k +r +lg+f ta+eAa a+++a++ l+g
  Bv5_103360_emgs.t1  75 CRYRGVRQRV-WGKWVAEIRKpISSelQNsgnKIRRLWLGTFPTAFEAACAYDEAARVLYG 134
                         78******99.**********6555894457556**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1175134IPR001471AP2/ERF domain
CDDcd000181.99E-2775144No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2776143IPR001471AP2/ERF domain
PROSITE profilePS5103222.08976142IPR001471AP2/ERF domain
SMARTSM003802.8E-3076148IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-1776143IPR016177DNA-binding domain
PRINTSPR003676.4E-97788IPR001471AP2/ERF domain
PRINTSPR003676.4E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSFGNEDQEK RNTQQRKKRI KDARIAVSET LAKWRSEEMP DDSCEGKSRT KRKQKPMGSK  60
RGCMSGKGGP ENSSCRYRGV RQRVWGKWVA EIRKPISSEL QNSGNKIRRL WLGTFPTAFE  120
AACAYDEAAR VLYGPSAILN FPDAGSESTG SSVYGLSSEK NVISLETHSS ASLHVCNGDS  180
EPEFLENKRT HIVKDSKEQI DDLEGKVTSK TESFSADDIQ CSQKKEQDGA TGTRDSKNSL  240
VNSMDVVAMQ QTSRDCGGYR QEEEEGSLDL DDLTGLINFD ESSFNIGQVD DLINFDRDFF  300
NFDDLSDFMK SDNSDTQEVK NVLFPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1477142360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-14761421472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676822.10.0PREDICTED: dehydration-responsive element-binding protein 2A
TrEMBLA0A0K9QQR77e-98A0A0K9QQR7_SPIOL; Uncharacterized protein
STRINGXP_010676822.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.18e-32ERF family protein