PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_103370_napz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 291aa    MW: 32585 Da    PI: 6.5195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_103370_napz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-1975138255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpse......ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr++  +g+WvAeIr+p +      n+    kr +r +lg+f ta eAa a+++a+k+++g
  Bv5_103370_napz.t1  75 TFRGVRQRT-WGKWVAEIREPINstggygNNnqqsKRsRRLWLGTFSTAIEAALAYDEAAKAMYG 138
                         69****999.**********666686665337987558************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-2774148No hitNo description
SuperFamilySSF541717.85E-1875148IPR016177DNA-binding domain
SMARTSM003801.7E-3475152IPR001471AP2/ERF domain
PROSITE profilePS5103221.79975146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2875147IPR001471AP2/ERF domain
PfamPF008474.4E-1476138IPR001471AP2/ERF domain
PRINTSPR003674.0E-97687IPR001471AP2/ERF domain
PRINTSPR003674.0E-9112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MESHLSERAY MNARRRRNGY NSVAEILAKW KIHNEQVGGA TTIEEPKKNP RKGPARGSRK  60
GCMPGKGGPE NLECTFRGVR QRTWGKWVAE IREPINSTGG YGNNNQQSKR SRRLWLGTFS  120
TAIEAALAYD EAAKAMYGPS AILNFPHQNE QQHVDQLPSS ESSQGSEKYK EMNEELKSPC  180
TSQVQGGGTK EEYVMHSGGG NYLNLGFDYS QDWVMEPLDG FEGGSFGLKQ EDDYEFNQNN  240
LFYGDCLFQH NRSSDAMPNY KIQQPLSGSL GIDFISSSDF LRPNTNLGDL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1676146360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-16761481574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676824.10.0PREDICTED: dehydration-responsive element-binding protein 2E
TrEMBLA0A0K9QAX71e-143A0A0K9QAX7_SPIOL; Uncharacterized protein
STRINGXP_010676824.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-32ERF family protein