PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_103620_tppe.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 378aa MW: 41355.9 Da PI: 7.7683

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_103620_tppe.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	59	119	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+ s Bv5_103620_tppe.t1 59 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRFFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPS 119 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	51	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-33	60	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MKPMEEILPN TCSSSLTAAT AVTTTTCSNL ISSNTTTTTN NSNSKPPSTS LERKVRPQKD 60 QAVNCPRCNS TNTKFCYYNN YSLTQPRFFC KTCRRYWTEG GSLRNIPVGG GSRKNKRPSS 120 SSYSSSSSKK ISSHDLVAAA AVHESNYPHH QNPKIHPHQM HQHHHHHQHY QGQDLNLGFP 180 HQTHHNQHQH QQQEFRSLSE FMQLPTIDQT SNTPKNQITN SAGGGAGGSA ATTATTTTTA 240 NDGHHHLSAL ELLNGLTSSR GLTPFMPMPV PDPNGVYSSG FSLQDFKPSL NFSLVDGLGN 300 GYGSLQGDQV HHQTTASETN NNNNGRLLFP FEDLKQVSST TSADHNNSTE NNNHDQNGEQ 360 EDSTPGYWSG MLGNGGSW

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MKPMEEILPN TCSSSLTAAT AVTTTTCSNL ISSNTTTTTN NSNSKPPSTS LERKVRPQKD  60
QAVNCPRCNS TNTKFCYYNN YSLTQPRFFC KTCRRYWTEG GSLRNIPVGG GSRKNKRPSS  120
SSYSSSSSKK ISSHDLVAAA AVHESNYPHH QNPKIHPHQM HQHHHHHQHY QGQDLNLGFP  180
HQTHHNQHQH QQQEFRSLSE FMQLPTIDQT SNTPKNQITN SAGGGAGGSA ATTATTTTTA  240
NDGHHHLSAL ELLNGLTSSR GLTPFMPMPV PDPNGVYSSG FSLQDFKPSL NFSLVDGLGN  300
GYGSLQGDQV HHQTTASETN NNNNGRLLFP FEDLKQVSST TSADHNNSTE NNNHDQNGEQ  360
EDSTPGYWSG MLGNGGSW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243101	1e-52	AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676854.1	0.0	PREDICTED: dof zinc finger protein DOF4.6
TrEMBL	A0A0K9QRP8	1e-112	A0A0K9QRP8_SPIOL; Uncharacterized protein
STRING	XP_010676854.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-36	Dof family protein