PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_104050_pcui.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 356aa    MW: 40142.7 Da    PI: 6.1863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_104050_pcui.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.7e-14181229154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +r +h e+Er RRd++N++f  Lr+++P        K++Ka+ L  Av YI++L
  Bv5_104050_pcui.t1 181 QRSNHVEAERHRRDKLNQRFYALRSVVPYV-----SKMDKASLLSDAVTYINEL 229
                         799**************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-1361153IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.34E-14179234No hitNo description
PROSITE profilePS5088817.466180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-12181229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-19181245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-19181259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTLKQRLQTV VESKPGLLYA IFWQMKSTNK KINHKRVLTC SDGYLKNSMN VGEHNEIVVP  60
GWFYAVSLTK LLDIDDNNLI IGQAMKSSSY MWLINADRNA NFSGLERAKE AIQYDIRTLV  120
FVPLTHLGGV IEIGSLDEID EDKSLIELTH FIFGSNIDDN SDLTSSRSES RTAADVPAKM  180
QRSNHVEAER HRRDKLNQRF YALRSVVPYV SKMDKASLLS DAVTYINELK AQVSSLEDQV  240
RVLESSSSPV TTVNNSTNSV HSQQLTTNSW SMEVEVDVKL IGEEAVIKVQ TSGLKFPEAK  300
LMNVLKELRL EVSYATISNV NNVVFENVIV KMPTYVDEFI STQEGLTNAI RQRLQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-22184239863Transcription factor MYC2
5gnj_B9e-22184239863Transcription factor MYC2
5gnj_E9e-22184239863Transcription factor MYC2
5gnj_F9e-22184239863Transcription factor MYC2
5gnj_G9e-22184239863Transcription factor MYC2
5gnj_I9e-22184239863Transcription factor MYC2
5gnj_M9e-22184239863Transcription factor MYC2
5gnj_N9e-22184239863Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019105026.10.0PREDICTED: transcription factor bHLH14-like isoform X1
TrEMBLA0A0K9RQ501e-119A0A0K9RQ50_SPIOL; Uncharacterized protein
STRINGXP_010676910.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-44bHLH family protein