PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_104170_xrgj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 355aa    MW: 40898.6 Da    PI: 6.4016
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_104170_xrgj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-52111401129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPt+eel+++yLkkkv+ ++++l +vi+++d++k+ePwd+++  ++ + ++++wyfFs++dkky+tg+r+nrat++g+Wkatg+
  Bv5_104170_xrgj.t1  11 VPPGFRFHPTEEELLQYYLKKKVAFESIDL-DVIRDIDLNKLEPWDIQEecRIGSgTQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 100
                         69****************************.9***************953544443556******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         dk ++s +++ +g++ktLvfykgrap+gek+dW+mheyrle
  Bv5_104170_xrgj.t1 101 DKMIYS-NNNRIGMRKTLVFYKGRAPHGEKSDWIMHEYRLE 140
                         ******.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-568176IPR003441NAC domain
PROSITE profilePS5100555.44411176IPR003441NAC domain
PfamPF023651.5E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNLSVNGHSK VPPGFRFHPT EEELLQYYLK KKVAFESIDL DVIRDIDLNK LEPWDIQEEC  60
RIGSGTQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKMIYSNNNR IGMRKTLVFY  120
KGRAPHGEKS DWIMHEYRLE DCTTTNNTVQ HDLSCVSRED NCIAEEGWVI CRVFRKKNYQ  180
KTNESPKCLP ISSESQSQLM NFSDKKVLDH IFSCMGKTYQ DENNHDHSTT STSTTSTNIF  240
PTYSCCTGKS NLNTPKERSI IHHNNNNHVT LNSQILEGDD DQYSLPMLSS SSPPFDHHPD  300
DGPMIDLCYD HQRLIEGDPK PRLSDWITLD RLIASQLNGQ DEELICSNSV MFHNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-481117817167NO APICAL MERISTEM PROTEIN
1ut4_B6e-481117817167NO APICAL MERISTEM PROTEIN
1ut7_A6e-481117817167NO APICAL MERISTEM PROTEIN
1ut7_B6e-481117817167NO APICAL MERISTEM PROTEIN
3swm_A7e-481117820170NAC domain-containing protein 19
3swm_B7e-481117820170NAC domain-containing protein 19
3swm_C7e-481117820170NAC domain-containing protein 19
3swm_D7e-481117820170NAC domain-containing protein 19
3swp_A7e-481117820170NAC domain-containing protein 19
3swp_B7e-481117820170NAC domain-containing protein 19
3swp_C7e-481117820170NAC domain-containing protein 19
3swp_D7e-481117820170NAC domain-containing protein 19
4dul_A6e-481117817167NAC domain-containing protein 19
4dul_B6e-481117817167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676921.10.0PREDICTED: NAC domain-containing protein 12
SwissprotQ84WP61e-102NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A0K9QA321e-124A0A0K9QA32_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676921.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.13e-91NAC domain containing protein 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]