PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_104730_xsdz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HD-ZIP
Protein Properties Length: 366aa    MW: 40459.1 Da    PI: 8.7803
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_104730_xsdz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.8e-19197251256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tk+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Bv5_104730_xsdz.t1 197 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 251
                         78889************************************************98 PP
2HD-ZIP_I/II127.94.3e-41197286191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+k+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Bv5_104730_xsdz.t1 197 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCEQLTEENRRLQKEVQELR-AL 286
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.4E-1678162IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.1E-18182247IPR009057Homeodomain-like
SuperFamilySSF466899.61E-19186254IPR009057Homeodomain-like
PROSITE profilePS5007117.54193253IPR001356Homeobox domain
SMARTSM003892.2E-16195257IPR001356Homeobox domain
CDDcd000864.52E-16197254No hitNo description
PfamPF000462.6E-16197251IPR001356Homeobox domain
PRINTSPR000314.2E-5224233IPR000047Helix-turn-helix motif
PROSITE patternPS000270228251IPR017970Homeobox, conserved site
PRINTSPR000314.2E-5233249IPR000047Helix-turn-helix motif
SMARTSM003407.9E-27253296IPR003106Leucine zipper, homeobox-associated
PfamPF021836.5E-11253287IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MMVAGKEDLG LSLCLGSSNN NNNNNNTTAT ASTSGNHPNN NNIGFLMNHH NNNNTTITSS  60
NIIMNRNHHL PQTTSSNNVS PLQLNLMMMP SSSTNHSPLL QKLPWNRSTD SFPPSSDRNS  120
DTCRSFLRGI DVNRPAGGDE EDVAVSSPNS TVSTLSGKRS SAERDSTNTA GAGDEIEVER  180
ASSRGLSDDE DGGENSRKKL RLTKDQSAIL EESFKEHNTL NPKQKLALAK RLGLRPRQVE  240
VWFQNRRART KLKQTEVDCE FLKRCCEQLT EENRRLQKEV QELRALKLSP QFYMQMTPPT  300
TLTMCPSCER VAVPPSATSS SSAKAQAQPC PDPRPNPVTH HRPIPVNPWV ATAVPIRSFD  360
PLHTRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201SRKKLRL
2245253RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677088.10.0PREDICTED: homeobox-leucine zipper protein HAT4 isoform X3
SwissprotP466011e-100HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A0K9RUY11e-170A0A0K9RUY1_SPIOL; Uncharacterized protein
STRINGXP_010677086.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.12e-99Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]