PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_104960_tyqu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 143aa    MW: 15963.1 Da    PI: 9.8402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_104960_tyqu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.98e-11854254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                        +++GV   kk+g W A++ +      rk  +lg++ t  eAa a+++a +kl+
  Bv5_104960_tyqu.t1  8 RFRGVV-PKKNGNWGAQVSVN-----RKPLWLGTYETVVEAANAYDRANLKLR 54
                        589996.8889******7773.....6*********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.85E-15763No hitNo description
SuperFamilySSF541713.73E-12858IPR016177DNA-binding domain
PROSITE profilePS5103214.394873IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-13858IPR001471AP2/ERF domain
PfamPF008474.2E-6854IPR001471AP2/ERF domain
SMARTSM003806.8E-9868IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEEGQAQRFR GVVPKKNGNW GAQVSVNRKP LWLGTYETVV EAANAYDRAN LKLRRLSALN  60
IPWYARPQEI EFQSMYPFAT VISMIKNGTY TQNYAYFMTD EAILARSQCL AGARNGQQSS  120
GETGISGVTE VHNPVKLFGV RIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677110.11e-104PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0K9RHZ12e-43A0A0K9RHZ1_SPIOL; Uncharacterized protein
STRINGXP_010677110.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-22RAV family protein