PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_106070_yyct.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 187aa    MW: 21346.7 Da    PI: 5.5912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_106070_yyct.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-054062123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Bv5_106070_yyct.t1 40 YTCTFCRREFRSAQALGGHMNVH 62
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-63767No hitNo description
Gene3DG3DSA:3.30.160.606.2E-43865IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-54063IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574067IPR007087Zinc finger, C2H2
SMARTSM003550.00664062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPNISIAQEE EEGEDTWELA RAFAEDTRSI MGTNWPPRSY TCTFCRREFR SAQALGGHMN  60
VHRRDRARLH HQSATVQDET RSVSMPTTSQ TSSLFYQIAN CRSTENVKEV MPSSVGNSLP  120
INRYTDNYNE LQVVSDEMCN GVIKVNHEEK GVIEELDLEL RLGHIPTSAS HEKLFEKNNN  180
VSVLNFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-143562229superman protein
2l1o_A4e-143562229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677249.11e-139PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A2H5QLH42e-38A0A2H5QLH4_CITUN; Uncharacterized protein
TrEMBLV4T9M52e-38V4T9M5_9ROSI; Uncharacterized protein
STRINGXP_010677249.11e-139(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-31C2H2 family protein