PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_106180_rzer.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LSD
Protein Properties Length: 146aa    MW: 15207.7 Da    PI: 7.9238
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_106180_rzer.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.69.7e-142852125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL YP+GA+sV+Ca+C++V
  Bv5_106180_rzer.t1 28 CSGCRNLLLYPAGATSVCCAVCNAV 52
                        ************************9 PP
2zf-LSD144.42.8e-146791125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C gC+tlL+Y rGA+sV+C++C+tV
  Bv5_106180_rzer.t1 67 CAGCHTLLMYIRGATSVQCSCCHTV 91
                        ************************9 PP
3zf-LSD141.91.7e-13105129125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  Bv5_106180_rzer.t1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.102.6E-423126No hitNo description
TIGRFAMsTIGR010534.4E-132555IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.93E-528126IPR011031Multihaem cytochrome
PfamPF069436.1E-112852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.7E-146493IPR005735Zinc finger, LSD1-type
PfamPF069439.7E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.7E-12102131IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTPPAN GAQSQLVCSG CRNLLLYPAG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCAGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT SIGASASTPE HKFNNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677260.11e-101PREDICTED: protein LOL1
SwissprotQ93ZB15e-81LOL1_ARATH; Protein LOL1
TrEMBLF6HTB13e-92F6HTB1_VITVI; Uncharacterized protein
STRINGXP_010677260.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-66lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]