PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_106630_zkef.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 643aa    MW: 71747.2 Da    PI: 7.2036
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_106630_zkef.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-163077148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ede+lv  ++ +  g+W++ a+  g+ R++k+c++rw++yl
  Bv5_106630_zkef.t1 30 KGPWTPDEDEKLVSHIQNHSHGSWRALAKAAGLSRCGKSCRLRWHNYL 77
                        79*********************************************7 PP
2Myb_DNA-binding52.79.8e-1783126146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +++eEd l+++++  lG++ W+ Ia++++ gRt++++k++w++
  Bv5_106630_zkef.t1  83 RGQFSEEEDNLIIQLHSVLGNK-WSQIAAHLP-GRTDNDIKNYWNT 126
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1992577IPR017930Myb domain
SuperFamilySSF466895.24E-3127124IPR009057Homeodomain-like
SMARTSM007174.2E-132979IPR001005SANT/Myb domain
PfamPF002491.7E-143077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-243184IPR009057Homeodomain-like
CDDcd001671.02E-93277No hitNo description
PROSITE profilePS5129428.42578132IPR017930Myb domain
SMARTSM007173.2E-1682130IPR001005SANT/Myb domain
PfamPF002491.5E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2785132IPR009057Homeodomain-like
CDDcd001672.11E-1286126No hitNo description
SMARTSM0071721139313IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-6287326IPR009057Homeodomain-like
CDDcd001670.00964287311No hitNo description
Gene3DG3DSA:1.10.10.604.7E-10287327IPR009057Homeodomain-like
PROSITE profilePS500905.703287311IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MLNKHISKTI TKVRRMGRSP CCSNSRGLKK GPWTPDEDEK LVSHIQNHSH GSWRALAKAA  60
GLSRCGKSCR LRWHNYLRPD IKRGQFSEEE DNLIIQLHSV LGNKWSQIAA HLPGRTDNDI  120
KNYWNTRIKK KLLKMGIDPA THMSRTDELN FIANHLAQVL APPPHVGTSI NHQVHANDHL  180
QLQQNIFQIP YTENSNSNHN SSFLPNTNIN AMYSSSLGFD QVPNCYVGQS HATTVVDNTT  240
YETLDAEKRL PAPFTVNQLE SNNDTNGSSS AAAVTTITGD FWKELFKWSQ IAAHCPERTN  300
KDIKNYWNTR LKEKLLNMGI DPTTDLNFLA NYLVQVLSAP PHLGASMNLG DFINVVGQQH  360
NYITIPEPEG AHLEVLKNIF QMLNTNSNNI TCSSSLGFCQ VPSYVGATQA TLVKTDDNTP  420
RLSLRLDVDH CYTQSLNKKS AMYETLDENT LPLVVDSSLA AMNVNQLESN TNSTYGSFTA  480
LTTVTGDFLE GWEKLADDGN DLWKGFLNHG HNSEKSKTTK DPVPSHHSRA PSHEVADETA  540
ENPRQAVVLS SRHQYVLEEV HPREATSVVN PGAPWLRTAQ TQAGLPRYEL TSPNPVTQQD  600
LQQLADRLSD NFKRGLRALI LNFQAGGEGT SNKPPLPPYL DWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30281325108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695546.11e-91PREDICTED: transcription factor MYB39
TrEMBLA0A0J8B8I53e-90A0A0J8B8I5_BETVU; Uncharacterized protein
STRINGXP_010677645.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-71myb domain protein 9