PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_107360_srki.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family BBR-BPC
Protein Properties Length: 236aa    MW: 25572 Da    PI: 10.4736
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_107360_srki.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind242.62.7e-7481236142301
           GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqS 232
                         + ak+ k++kk+++  +pke+k k kk +s+    k k  +++++ k+e+k++++   + s D s++P+P+CsCtGa rqCY+WG+GGWqS
  Bv5_107360_srki.t1  81 KPAKKPKTSKKTSNDPSPKEPKLKIKKGQSS----KAKGGGTSPSGKRERKNLNFRSYESSTDASGIPAPICSCTGAARQCYRWGSGGWQS 167
                         2233344444444444444444444333222....222333336799******************************************** PP

           GAGA_bind 233 aCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         +CCtt+iS yPLP+st+r+g+R agrKmS+ga+ klL++LaaeG+dl  p+DLkdhWAkHGtnkfvti+
  Bv5_107360_srki.t1 168 SCCTTNISEYPLPMSTTRPGSRTAGRKMSHGAYDKLLQRLAAEGFDLTIPIDLKDHWAKHGTNKFVTIK 236
                         ********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.6E-7222236IPR010409GAGA-binding transcriptional activator
PfamPF062178.3E-6973236IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGTFRSNYPM IPEGDRTRSV PHFSWFHPGN YLAATRNGGF SPFQGTQNNP DAAGLAAVPI  60
RCMPINEAAN IVVDAEPLPS KPAKKPKTSK KTSNDPSPKE PKLKIKKGQS SKAKGGGTSP  120
SGKRERKNLN FRSYESSTDA SGIPAPICSC TGAARQCYRW GSGGWQSSCC TTNISEYPLP  180
MSTTRPGSRT AGRKMSHGAY DKLLQRLAAE GFDLTIPIDL KDHWAKHGTN KFVTIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677416.11e-176PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822863e-59BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A0K9RZC61e-125A0A0K9RZC6_SPIOL; Uncharacterized protein
STRINGXP_010677416.11e-176(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-59basic pentacysteine 7