PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_108550_ihxm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 327aa MW: 37179.8 Da PI: 7.331

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_108550_ihxm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.7	9.2e-37	10	65	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++s Bv5_108550_ihxm.t1 10 PTCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRS 65 58**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.621	10	64	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	10	64	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	12	64	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	12	48	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MERGWKDMSP TCPRCGSSNT KFCYYNNYSL TQPRYFCKGC RRYWTKGGSL RNVPVGGGCR 60 KSRRSRPSML RLNTSSNHRN NPIYGSSHHQ NYNHNHHHQD ELGGNSSSYG NLSNMADPSS 120 PPTTSEAPKI DLAVVYANFL NQKPQNSPQV KLSSIPDATT IAPTSQVVLQ EHATFLHCTT 180 NDHPSSFSQA LPMPELMSND NNIDHQNQRL FVTEFSRPIH HEHDHHEDIP IQHELIGLPP 240 LPGESFMSQD HHHHHHQVMP WSSNLNDHHH HHHHHHNPHH DGHNLQVPLR PLQDLESDSQ 300 FSNLFNNGSW SPLDLPGFET SSSSSKI

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677728.1	0.0	PREDICTED: dof zinc finger protein DOF3.5-like
STRING	XP_010677728.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-41	Dof family protein