PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_109710_mfgh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WOX
Protein Properties Length: 288aa    MW: 30999.4 Da    PI: 6.4152
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_109710_mfgh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.81.2e-1544104257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+t+++eq+ +Le+ F++   +p +ee  ++ k l     + +++V++WFqNrR + ++
  Bv5_109710_mfgh.t1  44 RSRWTPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 104
                         89*****************99*************************************997 PP
2Wus_type_Homeobox107.48.7e-3543106265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  Bv5_109710_mfgh.t1  43 VRSRWTPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 106
                         589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1439111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-939109IPR009057Homeodomain-like
PROSITE profilePS5007111.45140105IPR001356Homeobox domain
SMARTSM003892.3E-642109IPR001356Homeobox domain
PfamPF000462.0E-1344104IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEDQAINQTN HNNNTSSENN SRSIISTSSS KGDRNNNTSG EPVRSRWTPK PEQILILESI  60
FNSGMVNPPK EETVRIRKLL EKFGAVGDAN VFYWFQNRRS RSRRRQRQLQ ASLAASAAIP  120
PPPPLPGSMG PTSLLGGGSA SLYDFGHHHP HEQQNGISST CTTAAAAASS SVACFAPSNT  180
SATISTTFAD CGDVFGTFSG QMSIINPTHE IDCPSDTPNL DFQSGIITVF LNGVATQIPD  240
GAFDMKAMFG EEVILVHSSG VPVAFNEFGI SLHSLQHGES YFLVPRLT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677789.10.0PREDICTED: WUSCHEL-related homeobox 11
TrEMBLA0A2R6R7L62e-71A0A2R6R7L6_ACTCH; WUSCHEL-related homeobox like
STRINGXP_010677789.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-35WUSCHEL related homeobox 11