PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_109750_gffr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 262aa    MW: 28534 Da    PI: 7.699
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_109750_gffr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-39361361100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq++++
  Bv5_109750_gffr.t1  36 PCGACKFLRRKCTSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVATM 126
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela+++++
  Bv5_109750_gffr.t1 127 QAELAMVQSQ 136
                         ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.93235137IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-3936134IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPDHHGDSGR RKSGIGKRST ATVLSDQEGL LAATAPCGAC KFLRRKCTSG CIFAPHFGSD  60
QGAARFAAVH KVFGASNVSK LLLHIPMNRR QDAVVTISYE AQARLSDPVY GCVSTILALQ  120
QQVATMQAEL AMVQSQVINS RLAMANVLQS SQHQQQLSCN NGFHEVIMHH HPHNHHIQQP  180
AYSNTSSASN NILNMNTTTT TSTATTAVYA STYNDFVVAA ASTALSSHSL DLLRLSRPQQ  240
DDEEDDEEIT RNRIAFANHL MH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37321397113LOB family transfactor Ramosa2.1
5ly0_B3e-37321397113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677793.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV34e-72LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0K9R2B11e-101A0A0K9R2B1_SPIOL; Uncharacterized protein
STRINGXP_010677793.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-72LOB domain-containing protein 20