PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_110950_cnxp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 257aa    MW: 29012.4 Da    PI: 7.086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_110950_cnxp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08144191455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+++Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Bv5_110950_cnxp.t1 144 SHSIAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 191
                         8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.50E-9138194No hitNo description
SuperFamilySSF474592.36E-16138208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.085140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15140202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5144191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-7146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MANYTANSNL FCSNNALSFL DNDISWEITN PFIMLQNPNL DYHSICDHFS IDQTSQVHAK  60
QCDSSVVLSG NESSETTNKR KVEDLTESST GSLYSSPPPI VSNDRVRKKT STGRGKKNKS  120
NDKVEGNPKE VVHVRARRGQ ATDSHSIAER VRRGKINERL RCLQDIVPGC YKTMGMAVML  180
DEIINYVQSL QNQVDFLSMK LTAASQFHDF NTEAEPMEKK QKIKGCNNDE AQDVERMLSR  240
GGYDQALPNF YQSTWPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677996.10.0PREDICTED: transcription factor BEE 3
TrEMBLA0A0K9Q9H31e-114A0A0K9Q9H3_SPIOL; Uncharacterized protein
STRINGXP_010677996.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-55BR enhanced expression 1