PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_111450_aqwk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 237aa    MW: 26905.2 Da    PI: 8.3904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_111450_aqwk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-054466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Bv5_111450_aqwk.t1 44 YSCNFCKREFRSAQALGGHMNVH 66
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-64171No hitNo description
PROSITE profilePS5015711.2194471IPR007087Zinc finger, C2H2
SMARTSM003550.00724466IPR015880Zinc finger, C2H2-like
PfamPF139126.3E-64467IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEQSPCWMLA NRGPRCPDDS WEEKAFADDA AGLLGGCVWP PRSYSCNFCK REFRSAQALG  60
GHMNVHRRDR ARLKQLSNFQ HLDQRLDPHR NSQSFSIEKT PHKQIDIVTD PMFVSINQTI  120
FSPQSQFVSS FLVSNDENLT FLGLRKDGKS RKSQCEIRKN IEIASSSLDL DGQASVVHNT  180
GASNRHKRRK LDISYPPSIN KSHKIDDEAP KADASTPEDL DLELRLGDRP KVQQNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-133966229superman protein
2l1o_A2e-133966229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678076.11e-178PREDICTED: probable transcriptional regulator RABBIT EARS
STRINGXP_010678076.11e-177(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-23C2H2 family protein