PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_113620_mtgp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 558aa    MW: 61092.9 Da    PI: 6.7295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_113620_mtgp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.13.2e-18257306255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR +iN++f+ Lrel+P++    ++K +Ka+ L +++eYI++Lq
  Bv5_113620_mtgp.t1 257 RSKHSATEQRRRCKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQYLQ 306
                         889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.1E-23253327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.641255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-18257332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-15257309No hitNo description
PfamPF000109.3E-16257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-13261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MELPQSRPFG TAQARKATHD FLSLYTHSSL QQDPRSSHGA GGLLKTHNFL QPLEGEEKIG  60
PKEDNLVDIN VKPPPAAPPT SVVEHVLPGG IGTYSISHIS YLNPRVPKPE ENIFSAAPVT  120
SNDRNDDNSN CSSYTGSGFT LWDESAVRKG NAGKENLGDV NIEKESTTKM GHWPLDRPSQ  180
SSSNYHSSVS PLSSSQALIQ KSQSFMEMIN SAKGPHSLEE EDEEELSLKR ESSSSQKEEL  240
RVKVGGKSSD QKAITPRSKH SATEQRRRCK INDRFQMLRE LIPHSDQKRD KASFLLEVIE  300
YIQYLQEKVN RYEGSYPGWN SEPPKLNPWR NSHGATEGFV DQPRVASDIN SPVLMFGAKL  360
DEKSTAISLN GPHNPQNPSE SSMLNAINVK TVDQRPEVTN KTGLISSQLQ QDIKAPIVSS  420
CAIIKPPIRL PAEGGHASLP QLQSWQSRTS ASEQSVAADK LKDQELALEG GTINISSVYS  480
QGLLSTLTRA LQSSGVDLSQ ASISVQVDIG KRANTRQNSQ EVVEKDTEAL IGNQSLLHAR  540
VDSTSSESDH AVKRLKTG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678382.10.0PREDICTED: transcription factor BIM2 isoform X1
TrEMBLA0A0J8CFF40.0A0A0J8CFF4_BETVU; Uncharacterized protein
STRINGXP_010678382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.43e-88bHLH family protein