PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_113990_ahet.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 482aa    MW: 52855.9 Da    PI: 7.5495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_113990_ahet.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.41.9e-16280326455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Bv5_113990_ahet.t1 280 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 326
                         6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-19274343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-19278334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-14280326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-16281330No hitNo description
SMARTSM003531.1E-17282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MMSQCIVPSW NLSHQRQDLK LNNQGEEVNR SSHVDLDSHH NHFQQHQNFS QLVPMSNFEV  60
TELTWENGQL AMHELGGMFP APTTTTTSSP PKATWAGGVG RVTDTLESIV HQATYCNNKQ  120
SPNLLPASVP HQHSGHQNIE NVGSSIVGSS GGKWAEKSGH IQTPVGPPPP PPVLMKKRTR  180
SESENCAVRN TNDHDMSACA SANAAFCKEN SNNNNTNNNN DTTMMTWASY ESPRSCTRTK  240
TTTDEDSACH DGSENQEEER DTKGETGRSY TTRKGRAAAV HNQSERRRRD RINQKMKALQ  300
KLVPNASKTD KASMLDEVIE YLKQLQAQVQ MMTNARFMPQ IMMPLGMQQH LHQMSLLARV  360
GMGAGLGMGL GMLDTTNMGA AHPATQAIPS IIHPTQVAAA TSTFMPPGFV VPQMVSAAAQ  420
QPNPADPGTS NSAPLHDPYS TLLAQSMNID LYNRIAALQR QQQASSQQTS NQLQSNHHVQ  480
RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678431.10.0PREDICTED: transcription factor PIF7
TrEMBLA0A0K9QNE10.0A0A0K9QNE1_SPIOL; Uncharacterized protein
STRINGXP_010678431.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-32bHLH family protein