PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_114130_gzxk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 338aa    MW: 38479.9 Da    PI: 6.5148
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_114130_gzxk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-5551301128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL +kv++  +++ +++++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke
  Bv5_114130_gzxk.t1   5 LPPGFRFHPTDEELITFYLSNKVSDFGFTC-KAMADVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKE 94 
                         79**************************99.88***************999999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ +g l+g+kktLvfy+grapkgekt+Wvmheyrl
  Bv5_114130_gzxk.t1  95 IFR-GGVLIGMKKTLVFYRGRAPKGEKTNWVMHEYRL 130
                         ***.*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-643151IPR003441NAC domain
PROSITE profilePS5100559.6395151IPR003441NAC domain
PfamPF023651.5E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT FYLSNKVSDF GFTCKAMADV DLNKCEPWDL PAKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV LIGMKKTLVF YRGRAPKGEK  120
TNWVMHEYRL DNKLSFKPTK EEWVVCRVFQ KSVAIKKPQP TSPSQVSPDS PDDNTTNGNE  180
FGDIELPNLN TLSTSPNAGF TYNSVQNYPN PNNHLNMNVN SSLNLNWARD HLANLPSLSW  240
HSSLLNPDLN STVNSLLLKA LQFRSTSSSA YQPREATSND YSFLGQHHQG LSLGTDQICS  300
NFGPSSTEKV FQSMPEEDHQ LNQQQQLQEQ PFNLDSMW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-55415716171NO APICAL MERISTEM PROTEIN
1ut4_B2e-55415716171NO APICAL MERISTEM PROTEIN
1ut7_A2e-55415716171NO APICAL MERISTEM PROTEIN
1ut7_B2e-55415716171NO APICAL MERISTEM PROTEIN
4dul_A2e-55415716171NAC domain-containing protein 19
4dul_B2e-55415716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678450.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A1B2RWE11e-177A0A1B2RWE1_9CARY; NAC transcription factor 17
STRINGXP_010678450.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-112NAC domain containing protein 58