PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_114720_jgyx.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Nin-like

Protein Properties

Length: 254aa MW: 28829.5 Da PI: 5.7332

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_114720_jgyx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.2	2.5e-26	92	141	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k ++ e +s+yF++pi+ AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Bv5_114720_jgyx.t1 92 KALTKEIISQYFYMPITRAAKELNVGLTLLKKRCRELGIQRWPHRKLMSL 141 7899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.564	69	161	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-22	94	141	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDMVSSFSIS HVIEDNNTLY GGYGNGFEGL HDLELEKAAP PPPPPPLMLC HDDSDHIKDD 60 LLENKNTEAS SETEERGVDN DNNNNSNNNI SKALTKEIIS QYFYMPITRA AKELNVGLTL 120 LKKRCRELGI QRWPHRKLMS LQTLIKNVQE LEKGGDKNET KLREAIQILE QEKKLMEEMP 180 DLQLETRTKR LRQACFKANY KKRKLINNLN YDKSPQSSSS SASTSIDTTN YGITKGAEYG 240 DGFMDVMNFS LFCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678556.2	1e-152	PREDICTED: protein RKD1
TrEMBL	A0A0K9RQK2	1e-104	A0A0K9RQK2_SPIOL; Uncharacterized protein
STRING	XP_010678556.1	1e-152	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	9e-55	RWP-RK domain-containing protein