PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_114810_nmrg.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB

Protein Properties

Length: 334aa MW: 37644.8 Da PI: 6.6281

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_114810_nmrg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g++R+ k+c++rw +yl Bv5_114810_nmrg.t1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.3	5.3e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Bv5_114810_nmrg.t1 67 RGNFTEQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.663	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.66E-10	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-25	65	117	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-16	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.48	66	116	IPR017930	Myb domain
Pfam	PF00249	3.4E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.97E-10	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLRRCS KSCRLRWTNY 60 LRPGIKRGNF TEQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKEE 120 EGQDGQNTLS QEGFSSNSSS STSSSHNTSN KGQWERRLQT DINMAKQALC EALSIDKPEL 180 LSSPTQAQQQ QQQSIYASST ENIARLLESW MIHKPISGGS SRDSTQNSCN DKKWIKSPDH 240 EEFKSLLRFN SNSNSSTTTT TTTTTTNDNN SQVSASVEVF QDESKPRFVT AAAVAEEQVP 300 LSLLEKWLFE EGISQEHVNM LDMSLDVENA ADLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	9e-26	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	1e-25	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	9e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	9e-26	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269\|PubMed:25305760, ECO:0000269\|PubMed:27577115}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269\|PubMed:25305760}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678525.1	0.0	PREDICTED: myb-related protein 306
Swissprot	Q9SN78	1e-115	MYB94_ARATH; Transcription factor MYB94
TrEMBL	A0A1U8A8R5	1e-131	A0A1U8A8R5_NELNU; myb-related protein 306
STRING	XP_010678525.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-103	myb domain protein 94

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Lee SB,Kim HU,Suh MC MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis. Plant Cell Physiol., 2016. 57(11): p. 2300-2311 [PMID:27577115]