PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_117160_ufxu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Dof
Protein Properties Length: 342aa    MW: 36970.9 Da    PI: 7.8
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_117160_ufxu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.21e-3948109263
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                         +e++l+cprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkksss
  Bv5_117160_ufxu.t1  48 HEQNLNCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKSSS 109
                         57899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2742102IPR003851Zinc finger, Dof-type
PfamPF027014.0E-3350106IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.11552106IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105490IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MMSEDISRGL ESSSSPSGTT TTTECMLAAA CSSRAGPPLM ERRLRPPHEQ NLNCPRCDST  60
HTKFCYYNNY SLSQPRYFCK TCRRYWTKGG TLRNIPVGGG CRKNKKSSSK KSNDQQNQPI  120
LNQHGGVLGS SSACSNPIDL HLSFPHHQVQ FPHHLANLIG AQMSSLGEGS FMDHNGGGGG  180
GLIRPIDFME SKYDEGLVGG GSRGHDFMGN NATNGSHQFG LMGDIGGYNT NPNTSFGGIY  240
SSSLPFDGNN PGISFMDQRL LLPFDGINSN DHHHHHHQSG VDVKPNPKLL SLEWQHQGCT  300
TTTSDNAAKD PSYGGYNING TTLNSWSGLM GGFQSPTTNS LV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678773.10.0PREDICTED: dof zinc finger protein DOF5.6
TrEMBLA0A0K9S1W21e-114A0A0K9S1W2_SPIOL; Uncharacterized protein
STRINGXP_010678773.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.12e-42Dof family protein